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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:42.2 nTPM
HPA Brain:45.4 nTPM
GTEx:42.2 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:66.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.4
Sample id Sample description nTPM
Amygdala
nTPM: 45.4
2695 Female, age 67, right hemisphere 52.3
2514 Male, age 75, right hemisphere 47.6
2814 Male, age 76, right hemisphere 47.2
2517 Female, age 94, left hemisphere 40.3
1987 Female, age 91, left hemisphere 39.5
Basal amygdala
nTPM: 39.1
2609 Male, age 75, right hemisphere 51.8
1955 Male, age 76, both hemispheres 43.8
2110 Male, age 80, left hemisphere 42.0
2685 Female, age 94, left hemisphere 36.9
2243 Female, age 91, right hemisphere 36.4
2827 Female, age 67, right hemisphere 23.8
Central amygdala
nTPM: 39.9
2515 Male, age 75, right hemisphere 48.4
1905 Male, age 76, both hemispheres 45.5
2239 Male, age 80, left hemisphere 38.8
2701 Female, age 91, right hemisphere 35.1
2826 Female, age 94, left hemisphere 31.8
Corticomedial amygdala
nTPM: 38.1
2428 Male, age 75, right hemisphere 49.6
2240 Male, age 76, both hemispheres 45.3
2429 Female, age 94, left hemisphere 41.1
2829 Male, age 80, left hemisphere 37.8
2242 Female, age 91, right hemisphere 30.3
2535 Female, age 67, right hemisphere 24.7
Lateral amygdala
nTPM: 39.3
2516 Male, age 75, right hemisphere 56.9
1883 Male, age 76, both hemispheres 44.6
2534 Female, age 94, left hemisphere 35.2
2256 Male, age 80, left hemisphere 33.7
2830 Female, age 67, right hemisphere 32.7
2255 Female, age 91, right hemisphere 32.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 42.2
Samples: 152

Max nTPM: 67.4
Min nTPM: 21.9
Std nTPM: 7.2
Median nTPM: 41.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 65.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 60.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 56.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 56.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 55.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 55.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 55.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 54.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 53.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 51.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 51.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 50.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 50.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 48.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 48.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 48.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 47.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 47.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 47.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 47.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 46.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 46.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 46.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 46.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 46.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 46.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 45.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 45.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 45.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 45.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 44.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 44.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 44.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 44.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 44.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 43.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 43.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 43.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 43.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 43.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 43.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 43.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 43.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 41.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 41.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 41.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 41.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 41.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 41.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 41.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 41.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 41.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 41.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 41.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 41.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 40.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 40.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 40.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 40.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 40.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 40.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 39.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 39.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 39.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 39.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 39.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 38.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 38.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 38.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 38.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 38.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 38.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 38.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 38.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 38.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 38.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 37.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 37.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 37.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 37.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 37.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 36.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 36.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 36.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 36.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 36.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 36.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 35.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 35.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 35.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 35.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 35.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 35.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 35.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 35.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 34.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 34.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 34.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 34.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 34.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 34.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 34.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 33.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 32.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 32.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 32.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 32.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 30.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 30.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 29.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 29.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 100.6
FF:10151-102I7 76 years, female 100.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.5
Pig sample Sample description nTPM
Amygdala
nTPM: 28.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 27.1
Sample A Female 29.1
Sample B Female 30.6
Sample C Male 27.1
Sample D Male 27.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 66.3
Samples: 4

Max nTPM: 73.3
Min nTPM: 63.4
Sample A Male 63.4
Sample B Male 73.3
Sample C Female 65.2
Sample D Female 63.4

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