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ABITRAM
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ABITRAM
Synonyms C9orf6, CG-8, FAM206A, FLJ20457, Simiate
Gene descriptioni

Full gene name according to HGNC.

Actin binding transcription modulator
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q31.3
Chromosome location (bp) 108934400 - 108950744
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000119328 (version 109)
Entrez gene 54942
HGNC HGNC:1364
UniProt Q9NX38 (UniProt - Evidence at protein level)
neXtProt NX_Q9NX38
GeneCards ABITRAM
Antibodypedia ABITRAM antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Actin-binding protein that regulates actin polymerization, filopodia dynamics and increases the branching of proximal dendrites of developing neurons.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Actin-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to be involved in dendrite morphogenesis; regulation of actin filament polymerization; and regulation of filopodium assembly. Predicted to be located in growth cone. Predicted to be active in several cellular components, including dendrite; filopodium tip; and lamellipodium. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ABITRAM-201
ENSP00000363753
ENST00000322940
Q9NX38
[Direct mapping] Protein Abitram
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0003785 [actin monomer binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0016607 [nuclear speck]
GO:0030027 [lamellipodium]
GO:0030425 [dendrite]
GO:0030426 [growth cone]
GO:0030833 [regulation of actin filament polymerization]
GO:0032433 [filopodium tip]
GO:0042995 [cell projection]
GO:0048813 [dendrite morphogenesis]
GO:0051015 [actin filament binding]
GO:0051489 [regulation of filopodium assembly]
Show all
181 aa
20.4 kDa
No 0
ABITRAM-202
ENSP00000363754
ENST00000374624
X6R8U7
[Direct mapping] Protein Abitram
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
115 aa
13.2 kDa
No 0
ABITRAM-203
ENSP00000398018
ENST00000445175
X6REY2
[Direct mapping] Protein Simiate
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030027 [lamellipodium]
GO:0030426 [growth cone]
Show all
129 aa
14.3 kDa
No 0

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