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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.7 nTPM
HPA Brain:156.8 nTPM
GTEx:134.7 nTPM
FANTOM5:356.2 Scaled Tags Per Million
Pig:0.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.8
Sample id Sample description nTPM
Amygdala
nTPM: 135.4
2695 Female, age 67, right hemisphere 153.9
1987 Female, age 91, left hemisphere 135.9
2514 Male, age 75, right hemisphere 135.5
2814 Male, age 76, right hemisphere 127.6
2517 Female, age 94, left hemisphere 124.4
Basal amygdala
nTPM: 126.9
2827 Female, age 67, right hemisphere 191.3
2110 Male, age 80, left hemisphere 130.2
2685 Female, age 94, left hemisphere 116.4
2609 Male, age 75, right hemisphere 116.2
1955 Male, age 76, both hemispheres 111.4
2243 Female, age 91, right hemisphere 95.8
Central amygdala
nTPM: 141.8
2826 Female, age 94, left hemisphere 238.6
2515 Male, age 75, right hemisphere 134.4
2239 Male, age 80, left hemisphere 130.2
1905 Male, age 76, both hemispheres 116.5
2701 Female, age 91, right hemisphere 89.4
Corticomedial amygdala
nTPM: 113.4
2535 Female, age 67, right hemisphere 134.4
2829 Male, age 80, left hemisphere 122.2
2240 Male, age 76, both hemispheres 114.4
2428 Male, age 75, right hemisphere 109.9
2242 Female, age 91, right hemisphere 108.1
2429 Female, age 94, left hemisphere 91.3
Lateral amygdala
nTPM: 156.8
2830 Female, age 67, right hemisphere 258.7
2516 Male, age 75, right hemisphere 172.4
2534 Female, age 94, left hemisphere 159.1
2256 Male, age 80, left hemisphere 129.9
1883 Male, age 76, both hemispheres 118.5
2255 Female, age 91, right hemisphere 102.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.7
Samples: 152

Max nTPM: 250.8
Min nTPM: 79.7
Std nTPM: 34.7
Median nTPM: 125.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 250.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 244.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 238.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 229.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 219.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 212.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 210.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 210.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 207.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 201.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 190.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 189.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 188.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 184.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 183.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 179.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 174.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 173.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 172.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 170.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 169.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 168.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 165.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 165.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 165.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 160.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 160.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 160.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 160.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 158.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 157.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 157.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 156.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 154.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 153.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 152.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 152.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 151.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 150.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 149.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 148.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 147.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 147.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 145.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 144.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 143.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 143.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 141.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 139.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 138.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 137.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 136.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 135.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 134.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 133.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 132.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 132.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 132.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 131.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 130.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 129.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 129.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 128.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 127.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 126.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 126.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 125.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 124.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 124.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 123.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 123.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 123.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 122.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 122.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 122.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 122.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 122.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 121.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 120.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 120.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 119.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 119.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 117.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 117.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 117.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 116.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 115.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 114.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 114.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 112.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 110.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 110.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 110.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 109.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 108.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 106.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 105.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 102.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 101.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 101.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 99.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 99.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 96.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 96.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 94.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 93.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 89.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 85.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 356.2
FF:10151-102I7 76 years, female 356.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.4
Pig sample Sample description nTPM
Amygdala
nTPM: 0.4
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.9
Sample D Male 0.1

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