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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
High
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Not detected
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
71.4
nTPM
GTEx:
71.4
nTPM
FANTOM5:
23.1
Scaled Tags Per Million
Pig:
68.3
nTPM
Mouse:
110.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA003436
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
High
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
71.4
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 71.4
Samples: 105
Max nTPM: 135.8
Min nTPM: 17.9
Std nTPM: 26.2
Median nTPM:
163_1
78 years, male
135.8
319_1
81 years, male
132.2
506_1
65 years, male
126.4
351_1
91 years, male
122.8
295_1
61 years, female
119.8
177_1
74 years, male
119.3
376_1
75 years, female
117.5
377_1
82 years, female
116.0
452_1
88 years, female
114.5
503_1
68 years, male
112.8
320_1
89 years, female
110.2
292_1
71 years, male
109.9
356_1
87 years, female
108.5
353_1
82 years, female
107.4
264_1
73 years, female
105.5
406_1
79 years, male
102.7
425_1
59 years, female
99.8
318_1
68 years, male
99.5
394_1
75 years, female
96.2
189_1
76 years, male
95.2
350_1
84 years, female
94.4
293_1
68 years, female
93.8
480_1
63 years, male
91.4
243_1
75 years, male
89.1
386_1
76 years, male
88.5
517_1
88 years, male
86.8
4_1
88 years, female
86.7
384_1
83 years, male
84.3
286_1
68 years, female
84.0
254_1
77 years, female
83.4
349_1
83 years, male
83.1
405_1
91 years, male
82.9
354_1
81 years, female
81.3
526_1
61 years, male
81.1
518_1
75 years, female
80.9
314_1
67 years, male
80.3
335_1
73 years, female
80.0
251_1
78 years, male
75.7
291_1
76 years, male
75.0
229_1
69 years, female
73.2
173_1
67 years, male
72.9
375_1
74 years, female
72.7
404_1
82 years, female
72.3
352_1
62 years, male
72.2
317_1
60 years, male
72.0
321_1
62 years, female
71.7
2_1
77 years, female
71.5
322_1
76 years, male
71.5
17_1
71 years, male
71.2
265_1
87 years, male
71.0
389_1
86 years, female
70.9
18_1
88 years, male
70.7
396_1
62 years, male
70.7
348_1
84 years, male
70.6
288_1
66 years, female
70.0
172_1
72 years, female
69.5
355_1
70 years, female
67.0
218_1
71 years, female
66.9
501_1
88 years, male
66.3
347_1
72 years, male
65.5
115_1
83 years, male
64.7
6_1
73 years, female
64.5
237_1
82 years, male
63.8
99_1
64 years, male
63.0
246_1
77 years, male
62.9
468_1
89 years, male
62.8
447_1
81 years, male
61.9
379_1
60 years, male
60.9
499_1
55 years, female
60.6
324_1
76 years, male
60.1
316_1
62 years, male
59.4
145_1
84 years, male
58.7
109_1
81 years, female
58.3
137_1
83 years, male
58.3
35_1
74 years, female
57.9
9_1
66 years, female
56.8
120_1
70 years, female
56.6
153_1
70 years, female
55.8
42_1
85 years, male
54.2
41_1
94 years, female
51.7
126_1
63 years, male
50.9
315_1
62 years, female
49.9
311_1
78 years, male
49.8
313_1
79 years, female
48.8
142_1
61 years, female
48.1
217_1
76 years, male
48.1
414_1
84 years, female
47.4
466_1
57 years, female
46.9
266_1
85 years, male
44.2
81_1
67 years, male
42.8
32_1
67 years, male
41.8
117_1
61 years, male
40.9
415_1
77 years, female
39.5
119_1
70 years, female
38.3
139_1
64 years, female
37.5
307_1
66 years, female
36.9
162_1
79 years, female
35.9
413_1
59 years, female
35.7
89_1
63 years, male
35.4
149_1
88 years, male
35.3
43_1
64 years, female
32.1
308_1
70 years, female
23.7
491_1
89 years, female
21.9
495_1
57 years, female
18.0
490_1
67 years, female
17.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
