MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:164.3 nTPM
HPA Brain:63.1 nTPM
GTEx:164.3 nTPM
FANTOM5:57.2 Scaled Tags Per Million
Pig:91.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.6
1870 Female, age 42, unknown 62.1
2666 Male, age 74, left hemisphere 61.9
1827 Male, age 72, unknown 61.1
2019 Male, age 18, unknown 59.9
2828 Female, age 72, unknown 59.5
2411 Female, age 72, unknown 49.9
2586 Male, age 75, left hemisphere 49.3
1833 Male, age 53, unknown 42.8
2219 Male, age 76, both hemispheres 41.6
1830 Male, age 51, unknown 38.0
Dorsal raphe nucleus
nTPM: 63.1
2298 Female, age 72, unknown 86.0
2047 Male, age 72, unknown 64.8
1828 Male, age 53, unknown 59.7
2016 Female, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 48.1
Inferior colliculus
nTPM: 51.7
2097 Female, age 72, unknown 68.9
1890 Male, age 53, unknown 52.1
1848 Female, age 42, unknown 45.9
2849 Male, age 72, unknown 39.8
Median raphe nucleus
nTPM: 51.8
2220 Male, age 76, midline 51.8
Periaquaductal grey, anterior
nTPM: 53.5
1795 Male, age 51, unknown 59.1
1947 Male, age 18, unknown 52.7
2502 Female, age 75, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 48.6
2850 Male, age 76, both hemispheres 54.2
1840 Male, age 53, unknown 52.1
1831 Male, age 72, unknown 51.7
2464 Female, age 72, unknown 36.4
Periaquaductal grey, lateral
nTPM: 47.6
2053 Male, age 18, unknown 51.0
2140 Male, age 76, both hemispheres 47.6
2272 Male, age 74, both hemispheres 44.3
Pretectal area
nTPM: 59.1
1816 Male, age 51, unknown 70.9
1817 Female, age 42, unknown 69.5
1944 Female, age 72, unknown 68.5
2273 Male, age 74, both hemispheres 64.1
1815 Male, age 53, unknown 62.6
2007 Male, age 72, unknown 62.0
2316 Male, age 76, right hemisphere 58.0
2224 Female, age 72, unknown 57.3
2667 Female, age 75, unknown 55.6
2825 Male, age 18, unknown 44.9
2407 Male, age 75, both hemispheres 37.0
Red nucleus
nTPM: 50.7
2503 Female, age 72, unknown 71.1
1821 Female, age 72, unknown 65.3
1904 Male, age 53, unknown 57.3
2823 Male, age 76, right hemisphere 55.9
2785 Male, age 18, unknown 54.7
1865 Male, age 51, unknown 52.7
1954 Female, age 42, unknown 47.9
2769 Male, age 72, unknown 45.7
2227 Male, age 72, unknown 44.7
2725 Female, age 75, unknown 43.6
2588 Male, age 74, left hemisphere 36.9
2584 Male, age 75, left hemisphere 32.2
Substantia nigra
nTPM: 55.1
1916 Female, age 42, unknown 72.6
1851 Male, age 51, unknown 67.1
1889 Female, age 72, unknown 59.2
2583 Male, age 75, right hemisphere 54.3
2590 Female, age 75, unknown 54.3
2665 Male, age 74, both hemispheres 53.8
2699 Male, age 18, unknown 53.7
1941 Male, age 53, unknown 51.6
2241 Male, age 72, unknown 47.9
2409 Female, age 72, unknown 36.5
Superior colliculus
nTPM: 59.7
2668 Female, age 75, unknown 76.4
1995 Male, age 72, unknown 71.9
2587 Male, age 74, left hemisphere 69.1
1913 Female, age 42, unknown 60.7
1796 Male, age 53, unknown 60.5
2261 Male, age 18, unknown 57.1
2087 Female, age 72, unknown 55.8
1895 Male, age 76, right hemisphere 53.4
2664 Male, age 75, both hemispheres 46.9
1839 Male, age 51, unknown 44.9
Ventral tegmental area
nTPM: 55.7
1915 Female, age 42, unknown 66.8
2218 Male, age 76, both hemispheres 56.9
1942 Male, age 51, unknown 55.7
2410 Female, age 72, unknown 51.9
2223 Female, age 72, unknown 51.6
2021 Male, age 53, unknown 51.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 164.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.3
Samples: 139

Max nTPM: 419.6
Min nTPM: 57.2
Std nTPM: 53.5
Median nTPM: 151.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 419.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 365.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 327.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 309.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 305.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 272.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 254.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 249.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 247.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 245.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 245.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.2
FF:10158-103A5 76 years, female 57.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.1
Samples: 4

Max nTPM: 111.1
Min nTPM: 54.4
Sample A Female 100.0
Sample B Female 74.9
Sample C Male 111.1
Sample D Male 54.4
Midbrain
nTPM: 91.0
Samples: 4

Max nTPM: 134.9
Min nTPM: 69.7
Sample A Female 69.7
Sample B Female 85.7
Sample C Male 134.9
Sample D Male 73.5
Periaqueductal gray
nTPM: 66.5
Samples: 3

Max nTPM: 77.9
Min nTPM: 58.4
Sample B Female 63.3
Sample C Male 77.9
Sample D Male 58.4
Superior colliculi
nTPM: 85.9
Samples: 4

Max nTPM: 105.7
Min nTPM: 72.7
Sample A Female 72.7
Sample B Female 82.1
Sample C Male 105.7
Sample D Male 83.2

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