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SLIRP
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLIRP
Synonyms C14orf156, DC50
Gene descriptioni

Full gene name according to HGNC.

SRA stem-loop interacting RNA binding protein
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 14
Cytoband q24.3
Chromosome location (bp) 77708071 - 77761104
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000119705 (version 109)
Entrez gene 81892
HGNC HGNC:20495
UniProt Q9GZT3 (UniProt - Evidence at protein level)
neXtProt NX_Q9GZT3
GeneCards SLIRP
Antibodypedia SLIRP antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

RNA-binding protein that acts as a nuclear receptor corepressor. Probably acts by binding the SRA RNA, and repressing the SRA-mediated nuclear receptor coactivation. Binds the STR7 loop of SRA RNA. Also able to repress glucocorticoid (GR), androgen (AR), thyroid (TR) and VDR-mediated transactivation.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Repressor, RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

Steroid receptor RNA activator (SRA, or SRA1; MIM 603819) is a complex RNA molecule containing multiple stable stem-loop structures that functions in coactivation of nuclear receptors. SLIRP interacts with stem-loop structure-7 of SRA (STR7) and modulates nuclear receptor transactivation (Hatchell et al., 2006).[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLIRP-201
ENSP00000238688
ENST00000238688
Q9GZT3
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005739 [mitochondrion]
Show all
107 aa
12.1 kDa
No 0
SLIRP-202
ENSP00000450587
ENST00000553981
H0YJ07
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
Show all
56 aa
6.8 kDa
No 0
SLIRP-206
ENSP00000452162
ENST00000556375
H0YJU7
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
Show all
72 aa
8.2 kDa
No 0
SLIRP-207
ENSP00000450770
ENST00000556831
H0YJ40
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005739 [mitochondrion]
Show all
96 aa
10.7 kDa
No 0
SLIRP-209
ENSP00000450909
ENST00000557342
Q9GZT3
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000961 [negative regulation of mitochondrial RNA catabolic process]
GO:0001669 [acrosomal vesicle]
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0007286 [spermatid development]
GO:0007338 [single fertilization]
GO:0030317 [flagellated sperm motility]
GO:0036126 [sperm flagellum]
GO:0048471 [perinuclear region of cytoplasm]
GO:0070584 [mitochondrion morphogenesis]
GO:1990904 [ribonucleoprotein complex]
Show all
109 aa
12.3 kDa
No 0
SLIRP-210
ENSP00000450849
ENST00000557431
G3V2S9
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005739 [mitochondrion]
Show all
124 aa
13.9 kDa
No 0
SLIRP-211
ENSP00000452057
ENST00000557623
G3V4X6
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005739 [mitochondrion]
Show all
98 aa
11 kDa
No 0
SLIRP-212
ENSP00000478794
ENST00000613856
A0A087WUN7
[Direct mapping] SRA stem-loop-interacting RNA-binding protein, mitochondrial
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003723 [RNA binding]
GO:0005739 [mitochondrion]
Show all
92 aa
10.4 kDa
No 0

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