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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:202.7 nTPM
FANTOM5:198.0 Scaled Tags Per Million
Pig:33.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA020291
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 202.7
Samples: 246

Max nTPM: 646.9
Min nTPM: 75.5
Std nTPM: 72.9
Median nTPM: 184.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 646.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 522.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 474.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 451.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 423.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 412.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 405.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 404.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 369.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 335.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 327.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 320.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 315.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 313.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 311.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 310.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 310.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 307.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 302.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 297.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 296.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 291.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 291.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 282.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 281.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 280.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 277.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 275.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 273.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 273.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 272.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 271.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 267.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 266.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 265.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 264.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 264.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 264.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 263.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 263.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 261.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 255.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 254.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 253.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 250.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 249.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 249.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 248.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 247.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 247.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 246.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 246.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 246.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 244.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 242.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 241.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 240.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 240.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 240.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 236.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 235.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 235.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 234.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 234.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 234.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 229.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 228.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 227.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 226.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 226.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 225.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 224.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 223.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 223.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 220.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 220.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 219.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 218.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 218.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 217.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 217.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 216.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 214.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 213.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 211.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 210.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 209.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 209.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 209.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 208.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 207.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 206.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 206.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 206.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 204.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 202.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 201.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 201.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 200.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 200.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 200.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 200.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 200.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 198.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 198.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 198.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 197.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 196.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 195.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 194.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 194.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 194.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 192.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 192.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 190.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 190.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 189.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 189.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 186.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 185.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 185.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 185.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 184.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 184.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 182.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 181.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 180.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 180.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 180.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 180.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 179.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 179.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 179.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 179.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 178.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 178.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 178.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 178.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 177.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 177.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 177.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 177.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 177.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 177.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 176.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 176.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 176.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 176.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 176.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 176.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 174.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 174.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 173.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 173.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 171.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 171.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 171.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 171.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 171.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 169.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 169.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 168.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 168.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 166.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 166.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 165.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 165.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 164.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 164.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 163.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 163.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 162.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 161.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 160.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 160.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 159.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 158.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 158.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 158.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 157.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 157.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 157.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 156.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 156.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 156.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 155.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 155.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 154.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 153.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 152.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 152.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 151.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 150.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 150.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 149.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 147.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 145.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 145.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 145.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 144.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 144.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 144.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 143.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 143.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 143.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 143.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 143.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 142.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 141.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 141.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 141.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 140.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 140.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 140.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 139.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 136.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 136.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 135.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 134.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 134.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 132.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 132.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 131.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 131.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 131.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 127.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 126.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 124.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 123.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 123.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 120.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 117.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 117.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 116.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 114.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 112.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 108.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 106.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 105.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 97.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 93.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 75.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

198.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 198.0
FF:10164-103B2 76 years, female 198.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.2
Pig sample Sample description nTPM
Caudate
nTPM: 33.2
Samples: 4

Max nTPM: 39.9
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 30.5
Sample C Male 33.9
Sample D Male 39.9

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