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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:211.2 nTPM
HPA Brain:104.8 nTPM
GTEx:211.2 nTPM
FANTOM5:195.9 Scaled Tags Per Million
Pig:34.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.9
1981 Female, age 72, midline 128.7
2194 Female, age 79, both hemispheres 87.4
2565 Male, age 75, midline 85.6
2816 Male, age 47, midline 80.1
2048 Male, age 55, midline 78.0
Cervical spinal cord, dorsal horn
nTPM: 102.0
2173 Female, age 72, unknown 143.3
2296 Male, age 66, both hemispheres 124.1
2069 Male, age 47, both hemispheres 99.0
1877 Male, age 55, unknown 90.6
2297 Male, age 75, both hemispheres 82.8
2721 Male, age 90, both hemispheres 72.0
Cervical spinal cord, ventral horn
nTPM: 104.8
2480 Male, age 75, both hemispheres 121.2
2809 Male, age 90, both hemispheres 109.8
2068 Male, age 55, unknown 105.3
2098 Female, age 72, unknown 105.2
2295 Male, age 66, both hemispheres 93.8
2820 Female, age 79, both hemispheres 93.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 211.2
Samples: 159

Max nTPM: 420.7
Min nTPM: 86.4
Std nTPM: 65.2
Median nTPM: 203.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 420.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 404.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 364.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 362.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 345.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 344.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 340.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 337.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 337.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 327.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 322.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 317.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 313.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 310.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 309.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 296.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 296.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 294.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 293.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 289.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 289.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 287.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 284.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 282.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 282.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 277.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 273.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 273.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 271.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 265.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 265.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 264.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 264.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 262.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 262.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 261.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 261.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 256.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 255.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 255.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 255.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 252.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 250.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 249.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 246.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 244.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 242.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 241.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 234.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 234.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 232.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 230.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 230.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 229.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 229.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 229.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 228.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 227.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 225.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 225.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 221.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 219.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 218.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 218.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 216.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 216.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 216.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 214.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 214.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 212.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 212.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 212.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 211.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 210.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 210.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 209.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 205.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 204.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 203.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 199.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 199.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 198.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 197.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 197.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 196.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 195.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 195.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 194.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 193.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 190.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 183.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 183.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 181.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 180.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 180.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 180.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 179.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 178.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 178.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 178.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 178.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 177.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 177.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 175.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 173.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 171.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 171.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 170.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 169.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 163.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 163.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 163.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 161.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 160.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 157.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 157.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 157.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 156.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 155.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 154.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 153.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 152.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 151.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 150.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 150.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 148.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 148.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 146.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 146.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 145.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 143.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 142.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 142.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 137.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 131.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 129.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 128.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 128.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 128.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 127.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 126.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 121.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 120.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 114.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 94.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 86.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 195.9
FF:10181-103D1 60 years, female 240.3
FF:10159-103A6 76 years, female 151.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 34.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 29.8
Sample A Female 34.1
Sample B Female 35.7
Sample C Male 39.7
Sample D Male 29.8
Ventral spinal cord
nTPM: 34.9
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.6
Sample A Female 35.0
Sample B Female 33.9
Sample C Male 38.9
Sample D Male 31.6

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