MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.6 nTPM
HPA Brain:79.6 nTPM
GTEx:68.6 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:189.8 nTPM
Mouse:388.0 nTPM
Allen mouse:14.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.2
2411 Female, age 72, unknown 85.4
2019 Male, age 18, unknown 81.5
1827 Male, age 72, unknown 78.9
2219 Male, age 76, both hemispheres 70.9
2666 Male, age 74, left hemisphere 69.5
1870 Female, age 42, unknown 66.3
1833 Male, age 53, unknown 59.5
2828 Female, age 72, unknown 54.7
1830 Male, age 51, unknown 54.5
2586 Male, age 75, left hemisphere 51.5
Dorsal raphe nucleus
nTPM: 68.5
2298 Female, age 72, unknown 89.1
1828 Male, age 53, unknown 77.6
2047 Male, age 72, unknown 68.4
2750 Male, age 76, both hemispheres 58.1
2016 Female, age 72, unknown 49.3
Inferior colliculus
nTPM: 79.6
2097 Female, age 72, unknown 97.2
1848 Female, age 42, unknown 78.7
1890 Male, age 53, unknown 78.7
2849 Male, age 72, unknown 63.8
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 59.9
1947 Male, age 18, unknown 71.2
1795 Male, age 51, unknown 57.2
2502 Female, age 75, unknown 51.2
Periaquaductal grey, dorsal
nTPM: 54.5
1840 Male, age 53, unknown 60.5
2850 Male, age 76, both hemispheres 52.7
1831 Male, age 72, unknown 52.5
2464 Female, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 74.2
2053 Male, age 18, unknown 50.3
2140 Male, age 76, both hemispheres 49.0
Pretectal area
nTPM: 77.9
2007 Male, age 72, unknown 106.1
1817 Female, age 42, unknown 101.5
1816 Male, age 51, unknown 97.8
1944 Female, age 72, unknown 97.3
2667 Female, age 75, unknown 86.4
1815 Male, age 53, unknown 74.2
2224 Female, age 72, unknown 68.0
2273 Male, age 74, both hemispheres 65.3
2825 Male, age 18, unknown 57.9
2316 Male, age 76, right hemisphere 53.4
2407 Male, age 75, both hemispheres 49.1
Red nucleus
nTPM: 63.0
1821 Female, age 72, unknown 90.9
2785 Male, age 18, unknown 78.4
2725 Female, age 75, unknown 73.9
1954 Female, age 42, unknown 66.3
2823 Male, age 76, right hemisphere 60.1
2769 Male, age 72, unknown 59.4
2503 Female, age 72, unknown 58.6
1865 Male, age 51, unknown 58.3
2227 Male, age 72, unknown 57.7
2588 Male, age 74, left hemisphere 54.3
1904 Male, age 53, unknown 53.5
2584 Male, age 75, left hemisphere 44.6
Substantia nigra
nTPM: 79.0
1941 Male, age 53, unknown 111.1
1916 Female, age 42, unknown 104.8
1889 Female, age 72, unknown 101.9
2409 Female, age 72, unknown 88.6
2241 Male, age 72, unknown 86.8
1851 Male, age 51, unknown 79.4
2665 Male, age 74, both hemispheres 56.2
2583 Male, age 75, right hemisphere 54.4
2590 Female, age 75, unknown 53.7
2699 Male, age 18, unknown 53.3
Superior colliculus
nTPM: 63.9
1895 Male, age 76, right hemisphere 86.5
2087 Female, age 72, unknown 85.0
2668 Female, age 75, unknown 74.0
2261 Male, age 18, unknown 69.2
1796 Male, age 53, unknown 67.4
1839 Male, age 51, unknown 66.3
2587 Male, age 74, left hemisphere 60.4
1913 Female, age 42, unknown 46.2
1995 Male, age 72, unknown 45.2
2664 Male, age 75, both hemispheres 38.7
Ventral tegmental area
nTPM: 69.5
2410 Female, age 72, unknown 91.8
2218 Male, age 76, both hemispheres 85.1
1915 Female, age 42, unknown 82.0
1942 Male, age 51, unknown 61.8
2223 Female, age 72, unknown 53.8
2021 Male, age 53, unknown 42.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.6
Samples: 139

Max nTPM: 395.0
Min nTPM: 18.1
Std nTPM: 55.1
Median nTPM: 46.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 395.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 294.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 215.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 182.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 180.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 178.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 177.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 174.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 162.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 157.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 147.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 189.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.9
Samples: 4

Max nTPM: 154.6
Min nTPM: 67.5
Sample A Female 154.6
Sample B Female 76.2
Sample C Male 133.2
Sample D Male 67.5
Midbrain
nTPM: 141.1
Samples: 4

Max nTPM: 219.3
Min nTPM: 73.2
Sample A Female 73.2
Sample B Female 90.4
Sample C Male 219.3
Sample D Male 181.4
Periaqueductal gray
nTPM: 91.0
Samples: 3

Max nTPM: 104.1
Min nTPM: 76.8
Sample B Female 92.0
Sample C Male 104.1
Sample D Male 76.8
Superior colliculi
nTPM: 189.8
Samples: 4

Max nTPM: 254.2
Min nTPM: 127.2
Sample A Female 202.2
Sample B Female 127.2
Sample C Male 254.2
Sample D Male 175.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 388.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 388.1
Samples: 4

Max nTPM: 397.3
Min nTPM: 380.9
Sample A Male 383.8
Sample B Male 397.3
Sample C Female 390.3
Sample D Female 380.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.7
75695658 Antisense, RP_060518_04_C09, Mouse strain C57BL/6J (56 days, male) 14.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org