MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.7 nTPM
HPA Brain:43.9 nTPM
GTEx:6.7 nTPM
FANTOM5:16.2 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:25.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.4
2586 Male, age 75, left hemisphere 42.3
1827 Male, age 72, unknown 40.6
2219 Male, age 76, both hemispheres 40.6
1870 Female, age 42, unknown 39.8
2828 Female, age 72, unknown 39.4
2019 Male, age 18, unknown 39.3
1833 Male, age 53, unknown 38.6
2411 Female, age 72, unknown 38.4
1830 Male, age 51, unknown 37.9
2666 Male, age 74, left hemisphere 37.5
Dorsal raphe nucleus
nTPM: 36.8
2750 Male, age 76, both hemispheres 39.0
2047 Male, age 72, unknown 38.0
2016 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 36.1
2298 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 38.3
1890 Male, age 53, unknown 40.1
2097 Female, age 72, unknown 39.4
1848 Female, age 42, unknown 38.4
2849 Male, age 72, unknown 35.1
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Periaquaductal grey, anterior
nTPM: 43.9
2502 Female, age 75, unknown 46.3
1947 Male, age 18, unknown 44.7
1795 Male, age 51, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 37.6
1831 Male, age 72, unknown 38.5
1840 Male, age 53, unknown 38.3
2464 Female, age 72, unknown 36.8
2850 Male, age 76, both hemispheres 36.7
Periaquaductal grey, lateral
nTPM: 33.9
2053 Male, age 18, unknown 37.8
2140 Male, age 76, both hemispheres 32.3
2272 Male, age 74, both hemispheres 31.8
Pretectal area
nTPM: 43.3
1944 Female, age 72, unknown 51.9
1817 Female, age 42, unknown 51.8
1816 Male, age 51, unknown 50.1
2007 Male, age 72, unknown 50.0
1815 Male, age 53, unknown 45.5
2407 Male, age 75, both hemispheres 40.2
2667 Female, age 75, unknown 40.0
2825 Male, age 18, unknown 40.0
2224 Female, age 72, unknown 36.7
2316 Male, age 76, right hemisphere 36.4
2273 Male, age 74, both hemispheres 33.2
Red nucleus
nTPM: 38.3
2584 Male, age 75, left hemisphere 43.4
1821 Female, age 72, unknown 42.1
2785 Male, age 18, unknown 41.3
2503 Female, age 72, unknown 40.5
1865 Male, age 51, unknown 40.3
2725 Female, age 75, unknown 39.7
1954 Female, age 42, unknown 38.2
1904 Male, age 53, unknown 37.7
2823 Male, age 76, right hemisphere 37.1
2227 Male, age 72, unknown 33.5
2769 Male, age 72, unknown 33.3
2588 Male, age 74, left hemisphere 32.9
Substantia nigra
nTPM: 37.4
1889 Female, age 72, unknown 43.3
1916 Female, age 42, unknown 40.2
2241 Male, age 72, unknown 39.8
1941 Male, age 53, unknown 39.1
2583 Male, age 75, right hemisphere 38.0
2665 Male, age 74, both hemispheres 37.4
1851 Male, age 51, unknown 35.7
2409 Female, age 72, unknown 35.6
2590 Female, age 75, unknown 35.2
2699 Male, age 18, unknown 29.7
Superior colliculus
nTPM: 40.8
2261 Male, age 18, unknown 44.4
2664 Male, age 75, both hemispheres 44.2
1995 Male, age 72, unknown 42.4
2087 Female, age 72, unknown 42.0
2668 Female, age 75, unknown 41.9
1913 Female, age 42, unknown 41.3
1895 Male, age 76, right hemisphere 38.8
1796 Male, age 53, unknown 38.7
2587 Male, age 74, left hemisphere 37.4
1839 Male, age 51, unknown 36.9
Ventral tegmental area
nTPM: 36.6
2223 Female, age 72, unknown 39.2
1942 Male, age 51, unknown 38.1
2218 Male, age 76, both hemispheres 38.1
2410 Female, age 72, unknown 37.1
2021 Male, age 53, unknown 33.8
1915 Female, age 42, unknown 33.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.7
Samples: 139

Max nTPM: 9.5
Min nTPM: 3.4
Std nTPM: 1.1
Median nTPM: 6.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 8.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 8.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 8.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.2
FF:10158-103A5 76 years, female 16.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.7
Samples: 4

Max nTPM: 55.7
Min nTPM: 39.6
Sample A Female 55.7
Sample B Female 39.6
Sample C Male 49.6
Sample D Male 45.7
Midbrain
nTPM: 58.6
Samples: 4

Max nTPM: 81.4
Min nTPM: 42.9
Sample A Female 81.4
Sample B Female 50.7
Sample C Male 59.3
Sample D Male 42.9
Periaqueductal gray
nTPM: 40.9
Samples: 3

Max nTPM: 41.7
Min nTPM: 39.5
Sample B Female 41.5
Sample C Male 41.7
Sample D Male 39.5
Superior colliculi
nTPM: 42.5
Samples: 4

Max nTPM: 49.7
Min nTPM: 31.7
Sample A Female 43.7
Sample B Female 31.7
Sample C Male 49.7
Sample D Male 44.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 26.6
Min nTPM: 24.4
Sample A Male 24.4
Sample B Male 26.6
Sample C Female 25.4
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68161467 Antisense, RP_041122_01_D08, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org