MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:55.6 nTPM
GTEx:20.2 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:71.9 nTPM
Mouse:69.6 nTPM
Allen mouse:16.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
1870 Female, age 42, unknown 37.8
2219 Male, age 76, both hemispheres 37.7
1827 Male, age 72, unknown 35.3
2666 Male, age 74, left hemisphere 33.2
2586 Male, age 75, left hemisphere 32.2
1833 Male, age 53, unknown 28.0
1830 Male, age 51, unknown 25.3
2411 Female, age 72, unknown 24.8
2019 Male, age 18, unknown 22.9
2828 Female, age 72, unknown 22.0
Dorsal raphe nucleus
nTPM: 29.7
2047 Male, age 72, unknown 44.0
2750 Male, age 76, both hemispheres 29.6
2298 Female, age 72, unknown 29.0
2016 Female, age 72, unknown 23.7
1828 Male, age 53, unknown 22.1
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 77.1
1890 Male, age 53, unknown 54.5
2849 Male, age 72, unknown 49.2
1848 Female, age 42, unknown 41.7
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Periaquaductal grey, anterior
nTPM: 38.6
1947 Male, age 18, unknown 43.5
2502 Female, age 75, unknown 41.0
1795 Male, age 51, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 35.9
1840 Male, age 53, unknown 54.1
2464 Female, age 72, unknown 31.8
1831 Male, age 72, unknown 30.4
2850 Male, age 76, both hemispheres 27.3
Periaquaductal grey, lateral
nTPM: 30.8
2053 Male, age 18, unknown 36.5
2140 Male, age 76, both hemispheres 28.8
2272 Male, age 74, both hemispheres 27.2
Pretectal area
nTPM: 31.5
2667 Female, age 75, unknown 38.6
2825 Male, age 18, unknown 37.3
2224 Female, age 72, unknown 36.9
1816 Male, age 51, unknown 36.5
2407 Male, age 75, both hemispheres 34.4
1817 Female, age 42, unknown 31.4
1944 Female, age 72, unknown 30.8
1815 Male, age 53, unknown 30.7
2007 Male, age 72, unknown 29.1
2316 Male, age 76, right hemisphere 21.1
2273 Male, age 74, both hemispheres 20.0
Red nucleus
nTPM: 28.8
2588 Male, age 74, left hemisphere 40.7
2584 Male, age 75, left hemisphere 36.5
1821 Female, age 72, unknown 33.0
1865 Male, age 51, unknown 30.6
1954 Female, age 42, unknown 28.0
2503 Female, age 72, unknown 27.4
2823 Male, age 76, right hemisphere 26.6
1904 Male, age 53, unknown 26.4
2769 Male, age 72, unknown 25.5
2725 Female, age 75, unknown 25.1
2227 Male, age 72, unknown 24.7
2785 Male, age 18, unknown 21.1
Substantia nigra
nTPM: 31.0
2241 Male, age 72, unknown 42.5
2409 Female, age 72, unknown 40.9
1889 Female, age 72, unknown 31.0
2699 Male, age 18, unknown 30.9
1916 Female, age 42, unknown 30.8
2665 Male, age 74, both hemispheres 30.1
1851 Male, age 51, unknown 28.1
2583 Male, age 75, right hemisphere 27.9
2590 Female, age 75, unknown 25.5
1941 Male, age 53, unknown 22.4
Superior colliculus
nTPM: 32.9
1796 Male, age 53, unknown 44.1
2664 Male, age 75, both hemispheres 43.2
1895 Male, age 76, right hemisphere 41.6
1839 Male, age 51, unknown 39.4
2261 Male, age 18, unknown 33.0
2668 Female, age 75, unknown 32.1
2087 Female, age 72, unknown 24.9
1913 Female, age 42, unknown 24.7
2587 Male, age 74, left hemisphere 24.7
1995 Male, age 72, unknown 20.9
Ventral tegmental area
nTPM: 35.3
2223 Female, age 72, unknown 48.2
2218 Male, age 76, both hemispheres 35.0
1942 Male, age 51, unknown 34.0
2410 Female, age 72, unknown 33.3
2021 Male, age 53, unknown 31.9
1915 Female, age 42, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 37.4
Min nTPM: 6.6
Std nTPM: 6.0
Median nTPM: 20.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 36.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 34.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 32.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 32.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 31.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 31.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 29.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 29.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.9
FF:10158-103A5 76 years, female 50.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.5
Samples: 4

Max nTPM: 49.1
Min nTPM: 21.0
Sample A Female 42.0
Sample B Female 29.7
Sample C Male 49.1
Sample D Male 21.0
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 173.6
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 46.9
Sample C Male 48.6
Sample D Male 173.6
Periaqueductal gray
nTPM: 42.8
Samples: 3

Max nTPM: 48.5
Min nTPM: 37.8
Sample B Female 42.1
Sample C Male 48.5
Sample D Male 37.8
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 71.8
Min nTPM: 17.2
Sample A Female 71.8
Sample B Female 17.2
Sample C Male 30.7
Sample D Male 51.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 78.7
Min nTPM: 61.7
Sample A Male 61.7
Sample B Male 67.5
Sample C Female 78.7
Sample D Female 70.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.3
75551462 Antisense, RP_060523_01_A05, Mouse strain C57BL/6J (56 days, male) 18.8
68924793 Antisense, RP_050309_01_A06, Mouse strain C57BL/6J (56 days, male) 15.5
70919471 Antisense, RP_050713_01_D08, Mouse strain C57BL/6J (56 days, male) 14.6

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