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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:24.5 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:16.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037511Antibody CAB011686
Glial cells LowLow
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.5
Samples: 246

Max nTPM: 48.8
Min nTPM: 18.1
Std nTPM: 3.8
Median nTPM: 23.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 48.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 40.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 39.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 34.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 33.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 32.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 32.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 31.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 31.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 31.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 31.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 31.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 30.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 30.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 29.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 29.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 29.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 29.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 29.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 28.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 28.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 28.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 28.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 28.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 28.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 28.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 28.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 28.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 28.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 27.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 27.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 27.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 27.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 27.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 27.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 27.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 27.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 27.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 27.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 27.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 27.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 27.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 26.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 26.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 26.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 26.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 26.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 26.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 26.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 26.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 26.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 26.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 26.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 26.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 26.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 26.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 26.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 26.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 26.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 26.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 25.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 25.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 25.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 25.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 25.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 25.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 25.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 25.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 25.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 25.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 25.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 25.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 25.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 25.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 25.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 25.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 25.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 25.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 25.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 24.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 24.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 24.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 24.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 24.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 24.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 24.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 24.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 24.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 24.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 24.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 24.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 24.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 24.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 24.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 24.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 24.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 24.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 24.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 24.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 24.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 24.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 24.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 24.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 24.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 24.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 23.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 23.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 23.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 23.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 23.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 23.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 23.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 23.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 23.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 23.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 23.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 23.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 23.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 23.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 23.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 23.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 23.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 23.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 23.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 23.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 23.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 23.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 23.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 23.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 23.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 23.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 23.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 23.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 23.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 23.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 23.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 23.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 23.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 22.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 22.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 22.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 22.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 22.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 22.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 22.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 22.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 22.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 22.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 22.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 22.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 22.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 22.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 22.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 22.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 22.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 22.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 22.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 22.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 22.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 22.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 22.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 22.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 22.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 22.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 22.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 22.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 22.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 22.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 22.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 22.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 22.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 22.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 22.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 21.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 21.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 21.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 21.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 21.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 21.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 21.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 21.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 21.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 21.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 21.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 21.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 21.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 21.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 21.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 21.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 21.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 21.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 21.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 21.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 21.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 21.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 21.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 21.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 21.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 21.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 21.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 21.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 21.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 20.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 20.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 20.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 20.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 20.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 20.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 20.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 20.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 20.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 20.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 20.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 20.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 20.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 20.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 20.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 20.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 19.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 19.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 19.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 19.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 19.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 19.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 19.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 19.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 19.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 18.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 18.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 18.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 18.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.7
FF:10164-103B2 76 years, female 51.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.7
Sample A Female 16.9
Sample B Female 16.0
Sample C Male 17.9
Sample D Male 15.7

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