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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 18.5
1984
Male, age 76, both hemispheres
21.0
2090
Male, age 80, both hemispheres
19.5
2188
Female, age 91, both hemispheres
17.3
2301
Female, age 85, both hemispheres
16.2
Dorsal cochlear nucleus nTPM: 15.7
2058
Male, age 76, both hemispheres
18.3
2370
Male, age 61, both hemispheres
17.0
2378
Male, age 80, both hemispheres
15.7
2187
Female, age 91, both hemispheres
15.6
2802
Male, age 74, right hemisphere
12.0
Dorsal tegmental nucleus nTPM: 27.0
2083
Male, age 80, both hemispheres
37.3
1936
Male, age 76, left hemisphere
31.5
2358
Male, age 61, both hemispheres
20.4
2326
Male, age 74, both hemispheres
18.8
Dorsolateral tegmental area nTPM: 27.3
2654
Male, age 80, both hemispheres
35.1
2141
Male, age 76, both hemispheres
34.2
2751
Female, age 85, both hemispheres
25.5
2360
Male, age 74, both hemispheres
22.5
2337
Male, age 61, both hemispheres
18.9
Kolliker-Fuse nucleus nTPM: 39.3
2315
Male, age 76, right hemisphere
61.1
2163
Male, age 80, both hemispheres
44.3
2793
Female, age 91, left hemisphere
12.6
Lateral lemniscal nuclei nTPM: 11.6
2453
Male, age 74, right hemisphere
13.4
2320
Female, age 91, left hemisphere
11.8
2036
Male, age 80, both hemispheres
11.5
2169
Male, age 76, both hemispheres
11.0
2746
Female, age 85, left hemisphere
10.2
Lateral parabrachial nucleus nTPM: 25.0
2792
Male, age 76, both hemispheres
36.1
2139
Female, age 85, right hemisphere
24.9
2013
Male, age 80, both hemispheres
21.6
2790
Male, age 61, both hemispheres
17.4
Lateral vestibular nucleus nTPM: 32.3
2184
Male, age 76, both hemispheres
37.5
2311
Male, age 80, both hemispheres
27.1
Locus coeruleus nTPM: 21.9
2162
Male, age 80, both hemispheres
31.4
1980
Male, age 76, both hemispheres
24.0
2317
Female, age 72, unknown
23.2
2788
Male, age 74, unknown
20.8
2014
Male, age 55, unknown
20.3
2123
Female, age 91, both hemispheres
19.6
2720
Male, age 74, both hemispheres
13.9
Medial parabrachial nucleus nTPM: 24.6
2786
Male, age 76, both hemispheres
34.2
2156
Male, age 61, both hemispheres
27.6
2463
Female, age 85, right hemisphere
22.0
2854
Male, age 80, both hemispheres
21.1
2170
Female, age 91, both hemispheres
17.9
Medial periolivary nuclei nTPM: 14.6
2791
Male, age 74, right hemisphere
27.4
2458
Female, age 91, both hemispheres
12.5
2063
Male, age 76, both hemispheres
12.0
2081
Male, age 80, both hemispheres
11.1
2171
Female, age 85, both hemispheres
10.2
Motor facial nucleus nTPM: 15.0
2795
Female, age 91, both hemispheres
22.3
2126
Male, age 61, both hemispheres
20.9
2365
Male, age 74, right hemisphere
18.0
2062
Male, age 76, both hemispheres
12.3
2697
Female, age 85, both hemispheres
9.4
2327
Male, age 80, both hemispheres
7.0
Motor trigeminal nucleus nTPM: 20.2
2309
Male, age 76, both hemispheres
34.0
2335
Male, age 61, both hemispheres
29.7
2560
Male, age 74, both hemispheres
13.1
2321
Female, age 91, both hemispheres
12.8
2079
Male, age 80, both hemispheres
11.2
Nuclei of the trapezoid body nTPM: 11.8
2368
Female, age 91, both hemispheres
14.1
2159
Male, age 61, both hemispheres
12.3
1983
Male, age 76, both hemispheres
11.5
2166
Male, age 80, both hemispheres
11.1
2735
Female, age 85, both hemispheres
9.9
Nucleus raphe magnus nTPM: 11.6
2455
Male, age 74, both hemispheres
16.6
2051
Male, age 76, both hemispheres
13.4
2459
Female, age 91, both hemispheres
11.8
2160
Male, age 61, both hemispheres
11.0
2328
Male, age 80, both hemispheres
9.4
2172
Female, age 85, both hemispheres
7.3
Paramedian reticular nucleus nTPM: 32.2
2057
Male, age 80, both hemispheres
41.1
2313
Male, age 61, both hemispheres
40.7
2052
Male, age 76, both hemispheres
27.0
2050
Female, age 85, both hemispheres
20.0
Pedunculopontine tegmental nucleus nTPM: 28.5
1921
Female, age 85, both hemispheres
39.8
2334
Male, age 80, both hemispheres
30.4
2338
Male, age 61, both hemispheres
15.2
Pontine nuclei nTPM: 10.7
1968
Male, age 76, left hemisphere
13.8
2319
Female, age 91, both hemispheres
12.7
2115
Male, age 80, left hemisphere
11.9
2109
Female, age 72, unknown
10.0
2727
Male, age 61, right hemisphere
9.9
2454
Male, age 74, left hemisphere
9.6
2787
Female, age 85, both hemispheres
9.2
1863
Male, age 55, unknown
8.4
Pontine raphe nucleus nTPM: 29.3
2853
Male, age 76, midline
35.2
2122
Female, age 85, midline
23.3
Posteroventral cochlear nucleus nTPM: 20.1
2752
Female, age 85, both hemispheres
29.1
2371
Male, age 61, both hemispheres
19.8
2341
Male, age 80, both hemispheres
19.2
2135
Female, age 91, both hemispheres
18.0
2070
Male, age 76, both hemispheres
14.3
Principal sensory trigeminal nucleus nTPM: 18.0
2324
Male, age 76, both hemispheres
38.5
2158
Male, age 61, both hemispheres
14.0
2367
Female, age 91, left hemisphere
10.5
2008
Male, age 80, left hemisphere
9.0
Reticular pontine nucleus, caudal nTPM: 14.2
2092
Male, age 76, both hemispheres
20.6
2559
Male, age 74, both hemispheres
14.4
2457
Female, age 91, both hemispheres
12.3
2332
Male, age 80, right hemisphere
9.5
Reticular pontine nucleus, oral nTPM: 19.4
2167
Male, age 76, both hemispheres
29.3
1939
Male, age 80, both hemispheres
28.5
2012
Female, age 85, both hemispheres
17.8
2366
Female, age 91, both hemispheres
12.3
2361
Male, age 74, both hemispheres
9.0
Reticulotegmental nucleus nTPM: 22.8
2333
Male, age 80, both hemispheres
26.3
2325
Male, age 76, both hemispheres
24.7
2322
Female, age 91, both hemispheres
21.9
2452
Male, age 74, both hemispheres
18.3
Spinal trigeminal nucleus, oral nTPM: 32.8
2164
Male, age 80, both hemispheres
35.8
2737
Female, age 85, both hemispheres
34.6
1978
Male, age 76, both hemispheres
27.9
Subcoeruleus area nTPM: 20.4
2369
Female, age 85, left hemisphere
24.7
2323
Female, age 91, left hemisphere
22.8
1958
Male, age 80, both hemispheres
22.5
2451
Male, age 74, both hemispheres
18.1
2089
Male, age 76, left hemisphere
13.8
Superior olive nTPM: 14.4
2364
Male, age 74, right hemisphere
23.5
2020
Male, age 76, both hemispheres
15.7
2561
Female, age 91, both hemispheres
13.6
2329
Male, age 80, right hemisphere
10.3
1875
Female, age 85, both hemispheres
9.1
Ventral periolivary nuclei nTPM: 13.0
2023
Male, age 76, both hemispheres
17.1
2130
Female, age 85, both hemispheres
12.6
2165
Male, age 80, both hemispheres
11.3
2794
Female, age 91, left hemisphere
10.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 16.0
2359
Male, age 61, both hemispheres
21.6
2840
Female, age 85, both hemispheres
19.0
1959
Male, age 76, both hemispheres
17.6
2456
Female, age 91, both hemispheres
14.0
2449
Male, age 74, both hemispheres
12.7
2161
Male, age 80, both hemispheres
10.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.1
Pig sample
Sample description
nTPM
Pons nTPM: 5.1
Samples: 4
Max nTPM: 6.8
Min nTPM: 1.1
Sample A
Female
1.1
Sample B
Female
6.8
Sample C
Male
6.7
Sample D
Male
5.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
