We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PDLIM2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PDLIM2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:43.1 nTPM
HPA Brain:36.8 nTPM
GTEx:43.1 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:22.6 nTPM
Allen mouse:2.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.8
Sample id Sample description nTPM
Amygdala
nTPM: 35.4
2695 Female, age 67, right hemisphere 42.8
2814 Male, age 76, right hemisphere 42.7
1987 Female, age 91, left hemisphere 37.9
2517 Female, age 94, left hemisphere 27.9
2514 Male, age 75, right hemisphere 25.5
Basal amygdala
nTPM: 30.2
2609 Male, age 75, right hemisphere 37.5
1955 Male, age 76, both hemispheres 34.3
2243 Female, age 91, right hemisphere 32.4
2827 Female, age 67, right hemisphere 29.0
2110 Male, age 80, left hemisphere 27.4
2685 Female, age 94, left hemisphere 20.6
Central amygdala
nTPM: 36.8
2515 Male, age 75, right hemisphere 49.9
1905 Male, age 76, both hemispheres 41.0
2826 Female, age 94, left hemisphere 40.7
2701 Female, age 91, right hemisphere 28.8
2239 Male, age 80, left hemisphere 23.8
Corticomedial amygdala
nTPM: 27.1
2428 Male, age 75, right hemisphere 35.8
2240 Male, age 76, both hemispheres 27.8
2242 Female, age 91, right hemisphere 27.5
2535 Female, age 67, right hemisphere 25.1
2829 Male, age 80, left hemisphere 24.3
2429 Female, age 94, left hemisphere 22.1
Lateral amygdala
nTPM: 33.3
2830 Female, age 67, right hemisphere 41.2
2516 Male, age 75, right hemisphere 38.8
2534 Female, age 94, left hemisphere 33.6
2255 Female, age 91, right hemisphere 32.5
2256 Male, age 80, left hemisphere 28.3
1883 Male, age 76, both hemispheres 25.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 43.1
Samples: 152

Max nTPM: 103.9
Min nTPM: 15.9
Std nTPM: 16.5
Median nTPM: 40.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 103.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 97.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 86.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 78.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 76.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 76.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 76.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 75.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 74.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 71.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 70.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 68.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 66.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 59.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 59.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 58.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 58.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 57.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 56.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 56.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 55.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 54.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 54.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 54.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 54.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 53.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 53.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 52.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 51.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 51.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 51.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 50.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 49.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 48.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 48.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 47.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 47.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 46.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 44.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 44.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 44.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 44.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 44.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 43.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 43.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 43.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 43.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 42.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 42.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 42.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 42.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 41.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 41.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 41.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 40.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 39.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 39.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 39.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 39.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 38.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 38.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 37.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 37.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 36.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 36.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 36.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 36.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 35.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 34.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 34.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 34.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 34.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 33.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 33.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 33.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 33.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 33.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 33.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 33.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 32.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 32.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 32.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 32.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 31.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 31.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 31.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 31.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 30.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 30.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 29.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 29.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 28.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 27.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 27.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 27.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 26.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 26.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 26.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 26.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 26.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 25.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 25.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 25.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 25.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 24.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 24.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 24.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 23.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 23.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 22.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 22.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 22.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 21.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 21.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 21.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 18.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 15.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.2
FF:10151-102I7 76 years, female 19.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.5
Pig sample Sample description nTPM
Amygdala
nTPM: 3.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.5
Sample A Female 3.9
Sample B Female 4.1
Sample C Male 3.3
Sample D Male 2.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.6
Samples: 4

Max nTPM: 39.2
Min nTPM: 16.0
Sample A Male 16.7
Sample B Male 18.4
Sample C Female 39.2
Sample D Female 16.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
2476 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 2.4
2477 Antisense, RP_040604_01_H09, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org