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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:111.7 nTPM
HPA Brain:87.5 nTPM
GTEx:111.7 nTPM
FANTOM5:88.2 Scaled Tags Per Million
Pig:234.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.2
2048 Male, age 55, midline 98.6
2565 Male, age 75, midline 85.0
1981 Female, age 72, midline 82.9
2816 Male, age 47, midline 81.1
2194 Female, age 79, both hemispheres 78.4
Cervical spinal cord, dorsal horn
nTPM: 87.5
2296 Male, age 66, both hemispheres 98.5
2173 Female, age 72, unknown 90.6
1877 Male, age 55, unknown 87.5
2069 Male, age 47, both hemispheres 84.6
2297 Male, age 75, both hemispheres 82.6
2721 Male, age 90, both hemispheres 81.0
Cervical spinal cord, ventral horn
nTPM: 86.3
2480 Male, age 75, both hemispheres 98.8
2809 Male, age 90, both hemispheres 94.2
2295 Male, age 66, both hemispheres 89.7
2098 Female, age 72, unknown 81.7
2820 Female, age 79, both hemispheres 77.8
2068 Male, age 55, unknown 75.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.7
Samples: 159

Max nTPM: 175.9
Min nTPM: 60.8
Std nTPM: 22.3
Median nTPM: 109.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 175.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 167.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 163.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 162.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 157.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 156.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 153.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 150.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 149.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 149.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 148.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 147.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 146.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 140.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 140.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 138.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 137.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 136.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 134.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 134.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 134.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 134.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 133.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 132.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 132.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 131.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 131.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 129.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 129.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 129.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 127.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 125.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 123.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 123.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 121.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 121.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 119.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 118.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 118.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 117.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 117.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 117.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 117.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 116.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 116.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 116.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 116.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 115.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 115.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 114.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 114.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 113.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 113.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 113.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 113.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 112.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 112.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 111.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 111.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 111.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 111.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 110.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 109.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 109.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 109.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 108.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 107.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 107.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 107.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 107.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 106.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 106.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 106.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 106.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 106.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 105.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 105.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 104.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 104.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 102.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 102.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 102.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 102.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 101.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 101.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 100.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 100.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 100.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 100.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 99.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 98.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 98.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 98.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 98.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 96.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 96.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 96.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 96.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 94.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 93.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 93.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 92.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 90.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 90.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 90.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 89.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 88.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 87.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 87.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 87.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 85.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 85.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 85.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 84.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 83.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 83.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 81.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 80.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 79.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 78.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 77.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 76.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 74.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 73.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 72.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 60.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 88.2
FF:10181-103D1 60 years, female 95.3
FF:10159-103A6 76 years, female 81.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 226.5
Samples: 4

Max nTPM: 265.0
Min nTPM: 188.7
Sample A Female 188.7
Sample B Female 239.7
Sample C Male 265.0
Sample D Male 212.4
Ventral spinal cord
nTPM: 234.8
Samples: 4

Max nTPM: 251.4
Min nTPM: 215.2
Sample A Female 215.2
Sample B Female 235.6
Sample C Male 251.4
Sample D Male 236.9

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