MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:31.1 nTPM
GTEx:20.2 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:85.6 nTPM
Mouse:67.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.8
1870 Female, age 42, unknown 31.6
1833 Male, age 53, unknown 25.4
1830 Male, age 51, unknown 24.1
2019 Male, age 18, unknown 23.8
2828 Female, age 72, unknown 22.2
2411 Female, age 72, unknown 22.1
1827 Male, age 72, unknown 17.7
2219 Male, age 76, both hemispheres 17.4
2666 Male, age 74, left hemisphere 12.5
2586 Male, age 75, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 24.7
2016 Female, age 72, unknown 30.1
2298 Female, age 72, unknown 28.1
2750 Male, age 76, both hemispheres 27.5
1828 Male, age 53, unknown 22.4
2047 Male, age 72, unknown 15.4
Inferior colliculus
nTPM: 19.4
1848 Female, age 42, unknown 21.2
2097 Female, age 72, unknown 19.8
2849 Male, age 72, unknown 18.5
1890 Male, age 53, unknown 18.2
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 19.4
1795 Male, age 51, unknown 20.2
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 23.3
2850 Male, age 76, both hemispheres 34.6
1831 Male, age 72, unknown 19.9
2464 Female, age 72, unknown 19.9
1840 Male, age 53, unknown 18.9
Periaquaductal grey, lateral
nTPM: 31.1
2272 Male, age 74, both hemispheres 36.2
2140 Male, age 76, both hemispheres 32.9
2053 Male, age 18, unknown 24.3
Pretectal area
nTPM: 22.1
2273 Male, age 74, both hemispheres 38.3
2667 Female, age 75, unknown 28.1
2316 Male, age 76, right hemisphere 27.4
2224 Female, age 72, unknown 26.7
1815 Male, age 53, unknown 21.6
1817 Female, age 42, unknown 20.3
2825 Male, age 18, unknown 20.2
2007 Male, age 72, unknown 16.9
2407 Male, age 75, both hemispheres 15.4
1944 Female, age 72, unknown 15.0
1816 Male, age 51, unknown 13.3
Red nucleus
nTPM: 25.1
1865 Male, age 51, unknown 32.0
1904 Male, age 53, unknown 31.7
1821 Female, age 72, unknown 28.6
2769 Male, age 72, unknown 28.5
1954 Female, age 42, unknown 28.4
2227 Male, age 72, unknown 28.0
2823 Male, age 76, right hemisphere 27.5
2785 Male, age 18, unknown 27.2
2503 Female, age 72, unknown 23.9
2725 Female, age 75, unknown 21.8
2588 Male, age 74, left hemisphere 12.8
2584 Male, age 75, left hemisphere 10.9
Substantia nigra
nTPM: 19.0
2409 Female, age 72, unknown 26.0
2699 Male, age 18, unknown 25.2
1851 Male, age 51, unknown 21.0
1889 Female, age 72, unknown 19.8
2590 Female, age 75, unknown 18.4
2241 Male, age 72, unknown 18.1
1916 Female, age 42, unknown 15.8
2583 Male, age 75, right hemisphere 15.6
2665 Male, age 74, both hemispheres 15.5
1941 Male, age 53, unknown 15.1
Superior colliculus
nTPM: 22.7
1995 Male, age 72, unknown 41.0
1913 Female, age 42, unknown 38.4
2587 Male, age 74, left hemisphere 24.7
1839 Male, age 51, unknown 20.9
1796 Male, age 53, unknown 19.6
1895 Male, age 76, right hemisphere 19.3
2087 Female, age 72, unknown 17.7
2668 Female, age 75, unknown 17.4
2261 Male, age 18, unknown 16.4
2664 Male, age 75, both hemispheres 11.2
Ventral tegmental area
nTPM: 21.5
2223 Female, age 72, unknown 25.6
2021 Male, age 53, unknown 22.6
2410 Female, age 72, unknown 21.7
2218 Male, age 76, both hemispheres 21.3
1915 Female, age 42, unknown 19.7
1942 Male, age 51, unknown 18.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 44.8
Min nTPM: 4.7
Std nTPM: 7.3
Median nTPM: 19.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 44.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 43.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 38.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 34.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 34.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 34.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 33.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 85.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.5
Samples: 4

Max nTPM: 81.1
Min nTPM: 66.9
Sample A Female 79.8
Sample B Female 78.1
Sample C Male 66.9
Sample D Male 81.1
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 131.8
Min nTPM: 51.2
Sample A Female 131.8
Sample B Female 82.4
Sample C Male 77.1
Sample D Male 51.2
Periaqueductal gray
nTPM: 76.1
Samples: 3

Max nTPM: 84.1
Min nTPM: 66.8
Sample B Female 84.1
Sample C Male 77.3
Sample D Male 66.8
Superior colliculi
nTPM: 79.4
Samples: 4

Max nTPM: 89.0
Min nTPM: 67.5
Sample A Female 80.3
Sample B Female 89.0
Sample C Male 80.7
Sample D Male 67.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 67.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 69.8
Min nTPM: 63.2
Sample A Male 69.7
Sample B Male 63.2
Sample C Female 65.2
Sample D Female 69.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70919370 Antisense, RP_050713_01_B11, Mouse strain C57BL/6J (56 days, male) 1.5

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