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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.0
Sample id
Sample description
nTPM
Amygdala nTPM: 10.2
2514
Male, age 75, right hemisphere
11.2
2695
Female, age 67, right hemisphere
11.1
1987
Female, age 91, left hemisphere
10.5
2814
Male, age 76, right hemisphere
9.6
2517
Female, age 94, left hemisphere
8.8
Basal amygdala nTPM: 10.3
2243
Female, age 91, right hemisphere
12.4
2110
Male, age 80, left hemisphere
11.7
2685
Female, age 94, left hemisphere
10.8
2609
Male, age 75, right hemisphere
9.3
2827
Female, age 67, right hemisphere
9.2
1955
Male, age 76, both hemispheres
8.5
Central amygdala nTPM: 10.8
1905
Male, age 76, both hemispheres
12.1
2701
Female, age 91, right hemisphere
11.8
2515
Male, age 75, right hemisphere
11.1
2239
Male, age 80, left hemisphere
10.3
2826
Female, age 94, left hemisphere
8.9
Corticomedial amygdala nTPM: 11.0
2829
Male, age 80, left hemisphere
12.3
2240
Male, age 76, both hemispheres
12.1
2428
Male, age 75, right hemisphere
11.5
2429
Female, age 94, left hemisphere
11.0
2242
Female, age 91, right hemisphere
9.6
2535
Female, age 67, right hemisphere
9.3
Lateral amygdala nTPM: 10.6
2255
Female, age 91, right hemisphere
12.2
2516
Male, age 75, right hemisphere
11.2
2830
Female, age 67, right hemisphere
10.2
2256
Male, age 80, left hemisphere
10.1
2534
Female, age 94, left hemisphere
10.0
1883
Male, age 76, both hemispheres
9.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 5.5
Samples: 152
Max nTPM: 13.2
Min nTPM: 2.5
Std nTPM: 1.6
Median nTPM: 5.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
13.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
11.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
11.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
11.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
9.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
9.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
8.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
8.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
8.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
8.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
8.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
7.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
7.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
7.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
7.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
7.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
7.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
7.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
7.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
7.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
7.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
6.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
6.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
6.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
6.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
6.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
6.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
6.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
6.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
6.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
6.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
6.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
6.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
6.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
6.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
6.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
6.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
6.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
6.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
6.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
6.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
6.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
6.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
6.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
5.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
5.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
5.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
5.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
5.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
5.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
5.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
5.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
5.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
5.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
5.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
5.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
5.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
5.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
5.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
5.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
5.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
5.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
5.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
5.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
5.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
5.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
5.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
5.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
5.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
5.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
5.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
5.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
5.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
5.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
5.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
5.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
5.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
5.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
5.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
5.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
5.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
5.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
5.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
5.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
5.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
5.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
4.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
4.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
4.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
4.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
4.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
4.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
4.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
4.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
4.8
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
4.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
4.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
4.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
4.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
4.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
4.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
4.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
4.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
4.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
4.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
4.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
4.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
4.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
4.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
4.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
4.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
4.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
4.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
4.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
4.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
4.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
4.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
4.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
4.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
4.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
4.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
4.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
4.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
4.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
4.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
4.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
4.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
3.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
3.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
3.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
3.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
3.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
3.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
3.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
3.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
3.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
3.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
3.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
3.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
3.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
3.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
3.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
3.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
3.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
3.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
3.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
3.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
3.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
3.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
3.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
2.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
2.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 29.5
Samples: 4
Max nTPM: 31.8
Min nTPM: 25.0
Sample A
Male
31.8
Sample B
Male
30.2
Sample C
Female
30.9
Sample D
Female
25.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
