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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:114.8 nTPM
HPA Brain:84.9 nTPM
GTEx:114.8 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Pig:77.2 nTPM
Mouse:555.4 nTPM
Allen mouse:23.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
Sample id Sample description nTPM
Amygdala
nTPM: 52.2
2517 Female, age 94, left hemisphere 80.6
1987 Female, age 91, left hemisphere 70.0
2695 Female, age 67, right hemisphere 42.1
2514 Male, age 75, right hemisphere 36.8
2814 Male, age 76, right hemisphere 31.6
Basal amygdala
nTPM: 84.9
2685 Female, age 94, left hemisphere 119.6
2827 Female, age 67, right hemisphere 98.6
2110 Male, age 80, left hemisphere 86.4
2243 Female, age 91, right hemisphere 77.5
1955 Male, age 76, both hemispheres 64.7
2609 Male, age 75, right hemisphere 62.8
Central amygdala
nTPM: 67.5
2826 Female, age 94, left hemisphere 96.9
2239 Male, age 80, left hemisphere 90.7
2701 Female, age 91, right hemisphere 69.9
2515 Male, age 75, right hemisphere 45.5
1905 Male, age 76, both hemispheres 34.8
Corticomedial amygdala
nTPM: 77.5
2829 Male, age 80, left hemisphere 126.7
2535 Female, age 67, right hemisphere 110.4
2429 Female, age 94, left hemisphere 76.5
2240 Male, age 76, both hemispheres 62.6
2428 Male, age 75, right hemisphere 51.9
2242 Female, age 91, right hemisphere 36.8
Lateral amygdala
nTPM: 74.7
2256 Male, age 80, left hemisphere 119.4
2534 Female, age 94, left hemisphere 118.0
2255 Female, age 91, right hemisphere 80.5
2830 Female, age 67, right hemisphere 51.3
1883 Male, age 76, both hemispheres 42.6
2516 Male, age 75, right hemisphere 36.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 114.8
Samples: 152

Max nTPM: 451.2
Min nTPM: 4.2
Std nTPM: 71.4
Median nTPM: 94.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 343.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 321.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 320.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 313.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 259.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 252.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 248.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 246.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 241.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 238.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 228.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 228.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 218.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 216.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 201.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 193.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 189.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 188.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 187.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 179.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 173.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 170.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 169.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 167.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 166.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 165.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 164.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 158.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 158.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 155.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 154.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 153.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 153.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 152.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 152.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 152.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 150.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 147.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 146.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 146.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 135.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 124.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 120.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 120.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 118.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 118.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 117.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 108.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 107.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 104.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 98.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 95.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 94.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 94.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 93.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 92.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 87.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 86.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 85.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 84.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 82.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 82.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 81.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 81.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 80.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 80.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 77.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 77.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 77.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 76.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 76.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 74.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 70.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 69.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 67.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 67.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 65.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 64.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 62.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 60.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 59.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 59.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 51.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 51.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 49.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 46.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 43.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 43.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 33.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 26.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 17.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 12.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 47.3
FF:10151-102I7 76 years, female 47.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.2
Pig sample Sample description nTPM
Amygdala
nTPM: 77.2
Samples: 4

Max nTPM: 140.8
Min nTPM: 50.0
Sample A Female 140.8
Sample B Female 56.4
Sample C Male 50.0
Sample D Male 61.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

555.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 555.4
Samples: 4

Max nTPM: 805.9
Min nTPM: 417.1
Sample A Male 417.1
Sample B Male 529.8
Sample C Female 805.9
Sample D Female 468.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.2
72129291 Antisense, RP_051017_03_F07, Mouse strain C57BL/6J (56 days, male) 24.8
75750508 Antisense, RP_060518_04_H10, Mouse strain C57BL/6J (56 days, male) 21.5

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