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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:860.5 nTPM
FANTOM5:376.4 Scaled Tags Per Million
Pig:1457.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043245Antibody CAB012340
Glial cells Not detectedNot detected
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

860.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 860.5
Samples: 246

Max nTPM: 2047.9
Min nTPM: 28.0
Std nTPM: 453.7
Median nTPM: 885.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2047.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2027.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2006.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1960.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1903.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1787.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1731.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1698.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1668.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1652.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1643.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1600.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1592.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1568.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1551.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1524.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1519.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1495.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1470.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1462.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1443.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1442.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1439.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1432.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1430.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1428.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1415.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1404.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1392.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1385.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1374.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1365.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1355.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1351.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1351.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1350.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1337.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1331.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1330.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1302.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1299.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1290.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1290.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1284.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1284.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1284.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1276.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1274.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1271.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1264.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1258.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1255.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1254.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1245.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1244.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1236.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1232.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1229.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1224.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1222.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1215.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1209.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1197.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1193.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1181.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1181.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1175.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1162.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1159.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1152.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1152.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1142.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1139.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1135.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1135.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1134.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1131.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1118.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1116.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1114.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1112.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1100.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1093.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1090.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1082.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1076.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1060.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1052.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1048.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1045.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1043.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1036.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1032.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1020.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1017.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1016.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1010.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1010.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1009.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 990.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 982.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 971.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 970.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 968.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 966.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 952.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 948.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 948.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 947.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 944.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 942.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 938.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 932.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 929.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 924.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 919.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 916.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 911.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 910.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 897.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 889.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 886.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 885.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 885.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 878.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 874.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 869.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 863.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 849.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 834.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 833.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 831.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 821.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 818.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 815.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 802.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 800.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 779.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 776.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 766.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 757.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 753.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 749.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 748.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 738.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 735.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 732.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 730.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 727.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 726.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 714.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 705.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 698.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 698.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 695.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 691.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 689.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 677.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 673.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 663.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 660.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 652.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 647.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 640.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 639.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 636.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 631.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 630.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 629.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 626.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 620.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 616.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 585.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 574.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 553.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 551.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 528.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 520.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 500.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 499.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 498.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 497.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 491.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 487.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 486.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 479.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 474.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 465.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 459.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 448.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 443.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 432.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 417.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 393.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 388.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 377.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 370.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 359.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 354.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 353.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 344.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 335.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 334.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 324.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 321.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 315.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 314.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 310.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 308.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 307.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 297.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 290.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 288.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 283.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 282.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 280.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 280.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 272.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 268.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 265.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 254.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 246.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 242.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 241.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 240.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 236.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 222.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 208.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 208.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 194.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 183.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 180.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 177.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 159.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 152.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 150.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 135.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 131.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 126.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 121.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 106.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 84.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 64.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 28.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

376.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 376.4
FF:10164-103B2 76 years, female 376.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1457.4
Pig sample Sample description nTPM
Caudate
nTPM: 1457.4
Samples: 4

Max nTPM: 2067.3
Min nTPM: 1019.4
Sample A Female 1019.4
Sample B Female 1394.0
Sample C Male 2067.3
Sample D Male 1348.9

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