We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ZRANB3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ZRANB3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ZRANB3
Synonyms AH2, DKFZP434B1727
Gene descriptioni

Full gene name according to HGNC.

Zinc finger RANBP2-type containing 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q21.3
Chromosome location (bp) 135136916 - 135531218
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000121988 (version 109)
Entrez gene 84083
HGNC HGNC:25249
UniProt Q5FWF4 (UniProt - Evidence at protein level)
neXtProt NX_Q5FWF4
GeneCards ZRANB3
Antibodypedia ZRANB3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

DNA annealing helicase and endonuclease required to maintain genome stability at stalled or collapsed replication forks by facilitating fork restart and limiting inappropriate recombination that could occur during template switching events 1, 2, 3, 4, 5. Recruited to the sites of stalled DNA replication by polyubiquitinated PCNA and acts as a structure-specific endonuclease that cleaves the replication fork D-loop intermediate, generating an accessible 3'-OH group in the template of the leading strand, which is amenable to extension by DNA polymerase 6. In addition to endonuclease activity, also catalyzes the fork regression via annealing helicase activity in order to prevent disintegration of the replication fork and the formation of double-strand breaks 7, 8.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Endonuclease, Helicase, Hydrolase, Multifunctional enzyme, Nuclease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA repair
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Metal-binding, Nucleotide-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables ATP-dependent DNA/DNA annealing activity; K63-linked polyubiquitin modification-dependent protein binding activity; and endodeoxyribonuclease activity. Involved in several processes, including DNA metabolic process; DNA rewinding; and negative regulation of DNA recombination. Located in nuclear replication fork and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ZRANB3-201
ENSP00000264159
ENST00000264159
Q5FWF4
[Direct mapping] DNA annealing helicase and endonuclease ZRANB3 DNA annealing helicase ZRANB3 Endonuclease ZRANB3
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003676 [nucleic acid binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0004519 [endonuclease activity]
GO:0004520 [endodeoxyribonuclease activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0009411 [response to UV]
GO:0016787 [hydrolase activity]
GO:0031297 [replication fork processing]
GO:0036292 [DNA rewinding]
GO:0036310 [ATP-dependent DNA/DNA annealing activity]
GO:0043596 [nuclear replication fork]
GO:0045910 [negative regulation of DNA recombination]
GO:0046872 [metal ion binding]
GO:0048478 [replication fork protection]
GO:0070530 [K63-linked polyubiquitin modification-dependent protein binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1079 aa
123.2 kDa
No 0
ZRANB3-202
ENSP00000383979
ENST00000401392
Q5FWF4
[Direct mapping] DNA annealing helicase and endonuclease ZRANB3 DNA annealing helicase ZRANB3 Endonuclease ZRANB3
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003676 [nucleic acid binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0004519 [endonuclease activity]
GO:0004520 [endodeoxyribonuclease activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0009411 [response to UV]
GO:0016787 [hydrolase activity]
GO:0031297 [replication fork processing]
GO:0036292 [DNA rewinding]
GO:0036310 [ATP-dependent DNA/DNA annealing activity]
GO:0043596 [nuclear replication fork]
GO:0045910 [negative regulation of DNA recombination]
GO:0046872 [metal ion binding]
GO:0048478 [replication fork protection]
GO:0070530 [K63-linked polyubiquitin modification-dependent protein binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
1077 aa
123.1 kDa
No 0
ZRANB3-210
ENSP00000441320
ENST00000536680
F5GYN7
[Direct mapping] DNA annealing helicase and endonuclease ZRANB3; Zinc finger, RAN-binding domain containing 3, isoform CRA_g
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0004519 [endonuclease activity]
GO:0005654 [nucleoplasm]
GO:0046872 [metal ion binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
625 aa
71.5 kDa
No 0
ZRANB3-211
ENSP00000480120
ENST00000619650
Q5FWF4
[Direct mapping] DNA annealing helicase and endonuclease ZRANB3 DNA annealing helicase ZRANB3 Endonuclease ZRANB3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003676 [nucleic acid binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0004519 [endonuclease activity]
GO:0004520 [endodeoxyribonuclease activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006281 [DNA repair]
GO:0006338 [chromatin remodeling]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0009411 [response to UV]
GO:0016787 [hydrolase activity]
GO:0031297 [replication fork processing]
GO:0036292 [DNA rewinding]
GO:0036310 [ATP-dependent DNA/DNA annealing activity]
GO:0043596 [nuclear replication fork]
GO:0045910 [negative regulation of DNA recombination]
GO:0046872 [metal ion binding]
GO:0048478 [replication fork protection]
GO:0070530 [K63-linked polyubiquitin modification-dependent protein binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0140658 [ATP-dependent chromatin remodeler activity]
Show all
598 aa
67.7 kDa
No 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org