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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:101.3 nTPM
HPA Brain:129.1 nTPM
GTEx:101.3 nTPM
FANTOM5:133.4 Scaled Tags Per Million
Pig:101.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 123.7
1981 Female, age 72, midline 135.9
2048 Male, age 55, midline 135.7
2194 Female, age 79, both hemispheres 121.3
2565 Male, age 75, midline 119.2
2816 Male, age 47, midline 106.4
Cervical spinal cord, dorsal horn
nTPM: 119.6
2173 Female, age 72, unknown 149.8
2069 Male, age 47, both hemispheres 120.4
2296 Male, age 66, both hemispheres 118.4
2721 Male, age 90, both hemispheres 115.3
2297 Male, age 75, both hemispheres 111.4
1877 Male, age 55, unknown 102.3
Cervical spinal cord, ventral horn
nTPM: 129.1
2809 Male, age 90, both hemispheres 146.0
2480 Male, age 75, both hemispheres 143.8
2098 Female, age 72, unknown 137.6
2295 Male, age 66, both hemispheres 136.7
2068 Male, age 55, unknown 112.2
2820 Female, age 79, both hemispheres 98.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 101.3
Samples: 159

Max nTPM: 182.8
Min nTPM: 51.7
Std nTPM: 19.5
Median nTPM: 101.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 182.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 145.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 144.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 143.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 141.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 132.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 128.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 128.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 127.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 126.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 125.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 124.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 124.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 123.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 123.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 123.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 122.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 122.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 121.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 121.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 120.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 120.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 120.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 119.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 118.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 118.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 118.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 117.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 117.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 116.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 115.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 114.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 113.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 112.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 112.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 112.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 112.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 111.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 111.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 111.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 111.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 111.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 111.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 110.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 110.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 110.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 110.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 109.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 108.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 108.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 107.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 107.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 106.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 106.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 106.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 106.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 105.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 104.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 104.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 104.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 104.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 103.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 102.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 102.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 102.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 102.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 102.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 101.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 101.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 101.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 101.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 100.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 100.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 98.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 98.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 97.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 97.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 97.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 96.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 96.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 96.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 96.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 95.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 95.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 95.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 94.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 94.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 93.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 93.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 93.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 93.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 93.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 92.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 92.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 90.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 90.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 90.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 90.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 89.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 89.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 89.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 88.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 88.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 87.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 87.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 86.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 85.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 85.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 85.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 85.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 85.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 82.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 81.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 79.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 79.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 78.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 77.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 76.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 76.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 75.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 75.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 74.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 73.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 71.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 69.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 66.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 66.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 63.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 59.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 57.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

133.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 133.4
FF:10159-103A6 76 years, female 136.7
FF:10181-103D1 60 years, female 130.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 87.8
Samples: 4

Max nTPM: 102.7
Min nTPM: 71.7
Sample A Female 95.8
Sample B Female 102.7
Sample C Male 71.7
Sample D Male 81.0
Ventral spinal cord
nTPM: 101.7
Samples: 4

Max nTPM: 118.6
Min nTPM: 88.6
Sample A Female 104.9
Sample B Female 118.6
Sample C Male 88.6
Sample D Male 94.5

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