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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:228.5 nTPM
HPA Brain:140.5 nTPM
GTEx:228.5 nTPM
FANTOM5:261.2 Scaled Tags Per Million
Pig:94.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.1
1981 Female, age 72, midline 157.4
2194 Female, age 79, both hemispheres 146.4
2565 Male, age 75, midline 124.7
2816 Male, age 47, midline 118.6
2048 Male, age 55, midline 98.6
Cervical spinal cord, dorsal horn
nTPM: 135.9
2173 Female, age 72, unknown 170.1
2296 Male, age 66, both hemispheres 167.6
2069 Male, age 47, both hemispheres 144.2
2297 Male, age 75, both hemispheres 118.1
1877 Male, age 55, unknown 115.4
2721 Male, age 90, both hemispheres 100.3
Cervical spinal cord, ventral horn
nTPM: 140.5
2480 Male, age 75, both hemispheres 160.1
2809 Male, age 90, both hemispheres 148.9
2098 Female, age 72, unknown 141.2
2068 Male, age 55, unknown 136.9
2820 Female, age 79, both hemispheres 129.1
2295 Male, age 66, both hemispheres 126.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

228.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 228.5
Samples: 159

Max nTPM: 364.1
Min nTPM: 123.0
Std nTPM: 47.5
Median nTPM: 223.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 364.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 362.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 360.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 326.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 326.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 321.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 314.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 312.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 308.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 305.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 302.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 302.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 300.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 299.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 293.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 290.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 289.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 287.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 287.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 285.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 285.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 285.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 283.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 281.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 280.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 276.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 275.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 273.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 271.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 269.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 269.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 268.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 265.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 263.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 262.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 262.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 262.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 259.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 259.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 258.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 258.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 256.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 255.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 254.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 253.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 250.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 250.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 246.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 245.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 245.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 245.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 244.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 243.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 243.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 242.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 242.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 242.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 242.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 242.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 241.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 239.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 238.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 238.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 235.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 234.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 234.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 233.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 232.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 232.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 230.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 229.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 229.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 229.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 225.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 225.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 224.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 223.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 222.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 222.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 222.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 222.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 220.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 220.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 219.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 219.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 218.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 217.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 217.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 217.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 216.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 215.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 214.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 213.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 213.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 213.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 212.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 211.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 208.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 208.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 207.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 207.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 207.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 206.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 206.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 204.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 204.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 203.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 202.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 200.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 198.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 197.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 197.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 196.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 194.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 194.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 193.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 192.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 192.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 192.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 190.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 190.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 186.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 182.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 182.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 181.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 181.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 181.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 180.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 180.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 180.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 179.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 179.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 178.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 177.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 173.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 171.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 171.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 171.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 170.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 165.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 164.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 163.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 162.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 162.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 158.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 158.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 152.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 150.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 139.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 128.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 125.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 123.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

261.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 261.2
FF:10181-103D1 60 years, female 309.1
FF:10159-103A6 76 years, female 213.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 94.5
Samples: 4

Max nTPM: 105.9
Min nTPM: 78.2
Sample A Female 103.3
Sample B Female 78.2
Sample C Male 90.7
Sample D Male 105.9
Ventral spinal cord
nTPM: 94.9
Samples: 4

Max nTPM: 105.2
Min nTPM: 84.4
Sample A Female 84.4
Sample B Female 101.4
Sample C Male 105.2
Sample D Male 88.4

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