MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.4 nTPM
HPA Brain:148.5 nTPM
GTEx:59.4 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:44.8 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 148.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.6
2586 Male, age 75, left hemisphere 357.0
2828 Female, age 72, unknown 135.6
2219 Male, age 76, both hemispheres 123.3
1830 Male, age 51, unknown 120.0
1833 Male, age 53, unknown 119.0
1827 Male, age 72, unknown 105.2
1870 Female, age 42, unknown 97.1
2666 Male, age 74, left hemisphere 93.0
2019 Male, age 18, unknown 88.1
2411 Female, age 72, unknown 87.4
Dorsal raphe nucleus
nTPM: 125.0
2047 Male, age 72, unknown 164.5
1828 Male, age 53, unknown 150.9
2016 Female, age 72, unknown 119.2
2298 Female, age 72, unknown 100.3
2750 Male, age 76, both hemispheres 90.4
Inferior colliculus
nTPM: 126.1
2849 Male, age 72, unknown 149.2
1848 Female, age 42, unknown 142.3
1890 Male, age 53, unknown 116.8
2097 Female, age 72, unknown 95.9
Median raphe nucleus
nTPM: 98.4
2220 Male, age 76, midline 98.4
Periaquaductal grey, anterior
nTPM: 103.6
2502 Female, age 75, unknown 114.9
1947 Male, age 18, unknown 108.0
1795 Male, age 51, unknown 87.9
Periaquaductal grey, dorsal
nTPM: 112.9
1840 Male, age 53, unknown 122.8
1831 Male, age 72, unknown 111.9
2850 Male, age 76, both hemispheres 111.4
2464 Female, age 72, unknown 105.4
Periaquaductal grey, lateral
nTPM: 99.4
2140 Male, age 76, both hemispheres 119.0
2053 Male, age 18, unknown 106.2
2272 Male, age 74, both hemispheres 73.2
Pretectal area
nTPM: 104.1
1817 Female, age 42, unknown 132.4
2825 Male, age 18, unknown 131.8
2667 Female, age 75, unknown 131.4
2407 Male, age 75, both hemispheres 119.5
1815 Male, age 53, unknown 105.6
1944 Female, age 72, unknown 94.4
2316 Male, age 76, right hemisphere 93.5
2007 Male, age 72, unknown 90.3
2224 Female, age 72, unknown 90.2
1816 Male, age 51, unknown 86.5
2273 Male, age 74, both hemispheres 69.4
Red nucleus
nTPM: 148.5
2588 Male, age 74, left hemisphere 229.1
1954 Female, age 42, unknown 206.1
1821 Female, age 72, unknown 184.1
1865 Male, age 51, unknown 164.9
2227 Male, age 72, unknown 158.7
2769 Male, age 72, unknown 156.3
2503 Female, age 72, unknown 146.3
1904 Male, age 53, unknown 145.9
2823 Male, age 76, right hemisphere 120.8
2584 Male, age 75, left hemisphere 110.0
2785 Male, age 18, unknown 88.4
2725 Female, age 75, unknown 72.0
Substantia nigra
nTPM: 110.7
2699 Male, age 18, unknown 179.7
1916 Female, age 42, unknown 145.9
2583 Male, age 75, right hemisphere 121.6
1851 Male, age 51, unknown 118.5
2665 Male, age 74, both hemispheres 116.7
1889 Female, age 72, unknown 114.7
2241 Male, age 72, unknown 86.0
1941 Male, age 53, unknown 84.0
2590 Female, age 75, unknown 73.6
2409 Female, age 72, unknown 66.8
Superior colliculus
nTPM: 114.1
2668 Female, age 75, unknown 208.9
2664 Male, age 75, both hemispheres 186.8
1796 Male, age 53, unknown 118.0
1839 Male, age 51, unknown 113.4
1895 Male, age 76, right hemisphere 112.1
2087 Female, age 72, unknown 92.7
2261 Male, age 18, unknown 92.7
1995 Male, age 72, unknown 84.8
2587 Male, age 74, left hemisphere 70.3
1913 Female, age 42, unknown 61.5
Ventral tegmental area
nTPM: 96.2
2410 Female, age 72, unknown 111.5
2218 Male, age 76, both hemispheres 101.8
1915 Female, age 42, unknown 97.4
1942 Male, age 51, unknown 95.4
2223 Female, age 72, unknown 89.9
2021 Male, age 53, unknown 81.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.4
Samples: 139

Max nTPM: 267.2
Min nTPM: 9.2
Std nTPM: 41.2
Median nTPM: 49.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 267.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 244.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 205.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 205.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 156.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 144.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 121.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 115.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 113.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 112.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 111.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.1
Samples: 4

Max nTPM: 86.5
Min nTPM: 44.5
Sample A Female 49.1
Sample B Female 44.5
Sample C Male 60.4
Sample D Male 86.5
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 75.7
Min nTPM: 47.5
Sample A Female 54.6
Sample B Female 47.5
Sample C Male 75.7
Sample D Male 48.3
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 50.0
Min nTPM: 45.1
Sample B Female 45.1
Sample C Male 50.0
Sample D Male 48.7
Superior colliculi
nTPM: 55.4
Samples: 4

Max nTPM: 64.2
Min nTPM: 40.2
Sample A Female 57.9
Sample B Female 40.2
Sample C Male 59.2
Sample D Male 64.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.8
Samples: 4

Max nTPM: 49.8
Min nTPM: 40.9
Sample A Male 49.8
Sample B Male 42.3
Sample C Female 40.9
Sample D Female 46.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
75651138 Antisense, RP_060518_01_A01, Mouse strain C57BL/6J (56 days, male) 9.4
71656697 Antisense, RP_050927_04_B05, Mouse strain C57BL/6J (56 days, male) 7.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org