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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:176.6 nTPM
HPA Brain:64.4 nTPM
GTEx:176.6 nTPM
FANTOM5:542.5 Scaled Tags Per Million
Pig:29.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 35.6
1981 Female, age 72, midline 52.4
2565 Male, age 75, midline 34.3
2048 Male, age 55, midline 32.3
2194 Female, age 79, both hemispheres 32.0
2816 Male, age 47, midline 27.0
Cervical spinal cord, dorsal horn
nTPM: 48.9
2069 Male, age 47, both hemispheres 87.3
2173 Female, age 72, unknown 49.9
2297 Male, age 75, both hemispheres 42.5
1877 Male, age 55, unknown 38.9
2296 Male, age 66, both hemispheres 37.8
2721 Male, age 90, both hemispheres 37.1
Cervical spinal cord, ventral horn
nTPM: 64.4
2098 Female, age 72, unknown 131.2
2809 Male, age 90, both hemispheres 85.9
2480 Male, age 75, both hemispheres 60.8
2295 Male, age 66, both hemispheres 51.1
2068 Male, age 55, unknown 35.3
2820 Female, age 79, both hemispheres 22.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 176.6
Samples: 159

Max nTPM: 972.1
Min nTPM: 23.0
Std nTPM: 140.2
Median nTPM: 130.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 972.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 621.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 615.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 580.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 571.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 541.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 486.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 478.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 455.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 417.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 394.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 382.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 368.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 361.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 352.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 346.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 344.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 339.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 317.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 314.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 312.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 309.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 306.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 302.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 299.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 296.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 296.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 289.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 280.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 272.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 271.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 269.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 260.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 259.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 256.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 256.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 251.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 241.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 232.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 228.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 225.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 224.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 223.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 221.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 219.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 214.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 210.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 207.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 207.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 207.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 191.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 189.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 186.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 186.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 186.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 183.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 180.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 180.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 174.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 170.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 168.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 156.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 155.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 153.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 153.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 152.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 151.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 150.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 148.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 145.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 144.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 137.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 136.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 131.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 130.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 130.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 122.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 122.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 117.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 116.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 115.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 114.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 113.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 112.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 112.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 111.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 106.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 106.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 104.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 103.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 103.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 102.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 102.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 100.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 99.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 98.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 96.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 95.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 92.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 91.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 91.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 91.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 90.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 90.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 89.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 88.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 85.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 85.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 84.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 81.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 76.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 74.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 72.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 72.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 69.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 68.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 68.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 67.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 66.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 66.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 64.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 63.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 63.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 62.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 62.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 62.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 58.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 57.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 55.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 55.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 55.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 51.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 51.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 50.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 49.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 47.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 44.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 41.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 38.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 37.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 31.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 23.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

542.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 542.5
FF:10181-103D1 60 years, female 668.2
FF:10159-103A6 76 years, female 416.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 29.7
Samples: 4

Max nTPM: 50.8
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 37.9
Sample C Male 50.8
Sample D Male 19.4
Ventral spinal cord
nTPM: 22.4
Samples: 4

Max nTPM: 30.0
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 23.1
Sample C Male 27.3
Sample D Male 30.0

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