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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:113.5 nTPM
HPA Brain:109.6 nTPM
GTEx:113.5 nTPM
FANTOM5:284.7 Scaled Tags Per Million
Pig:119.7 nTPM
Mouse:258.3 nTPM
Allen mouse:8.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.6
Sample id Sample description nTPM
Amygdala
nTPM: 103.9
2814 Male, age 76, right hemisphere 122.4
2695 Female, age 67, right hemisphere 107.5
2514 Male, age 75, right hemisphere 100.5
1987 Female, age 91, left hemisphere 95.2
2517 Female, age 94, left hemisphere 93.8
Basal amygdala
nTPM: 96.9
2609 Male, age 75, right hemisphere 106.2
1955 Male, age 76, both hemispheres 100.1
2243 Female, age 91, right hemisphere 99.1
2110 Male, age 80, left hemisphere 94.0
2685 Female, age 94, left hemisphere 93.2
2827 Female, age 67, right hemisphere 89.0
Central amygdala
nTPM: 109.6
2826 Female, age 94, left hemisphere 127.0
2515 Male, age 75, right hemisphere 124.9
1905 Male, age 76, both hemispheres 110.1
2239 Male, age 80, left hemisphere 101.8
2701 Female, age 91, right hemisphere 84.0
Corticomedial amygdala
nTPM: 96.2
2829 Male, age 80, left hemisphere 112.9
2428 Male, age 75, right hemisphere 112.2
2240 Male, age 76, both hemispheres 95.8
2429 Female, age 94, left hemisphere 91.6
2242 Female, age 91, right hemisphere 90.8
2535 Female, age 67, right hemisphere 74.1
Lateral amygdala
nTPM: 101.1
2534 Female, age 94, left hemisphere 118.6
2516 Male, age 75, right hemisphere 115.0
1883 Male, age 76, both hemispheres 114.9
2830 Female, age 67, right hemisphere 102.2
2256 Male, age 80, left hemisphere 86.7
2255 Female, age 91, right hemisphere 69.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 113.5
Samples: 152

Max nTPM: 296.9
Min nTPM: 23.5
Std nTPM: 34.5
Median nTPM: 106.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 296.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 223.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 190.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 188.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 187.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 180.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 174.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 165.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 161.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 160.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 158.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 157.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 156.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 153.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 151.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 151.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 151.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 151.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 149.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 148.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 147.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 147.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 146.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 146.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 145.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 145.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 144.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 143.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 142.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 138.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 138.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 135.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 131.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 130.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 130.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 129.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 129.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 126.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 126.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 126.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 126.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 124.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 123.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 123.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 123.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 121.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 119.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 118.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 118.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 117.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 116.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 115.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 114.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 111.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 110.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 110.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 110.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 107.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 107.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 106.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 106.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 106.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 106.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 105.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 104.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 104.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 104.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 103.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 103.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 102.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 102.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 100.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 99.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 95.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 94.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 94.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 93.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 93.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 92.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 92.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 91.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 91.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 91.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 91.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 91.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 87.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 87.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 85.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 85.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 85.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 84.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 84.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 82.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 80.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 76.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 72.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 67.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 60.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 60.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 58.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 49.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 36.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 23.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 284.7
FF:10151-102I7 76 years, female 284.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.7
Pig sample Sample description nTPM
Amygdala
nTPM: 119.8
Samples: 4

Max nTPM: 144.5
Min nTPM: 103.0
Sample A Female 144.5
Sample B Female 116.7
Sample C Male 114.8
Sample D Male 103.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 258.3
Samples: 4

Max nTPM: 272.8
Min nTPM: 249.6
Sample A Male 253.3
Sample B Male 272.8
Sample C Female 257.4
Sample D Female 249.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.0
1276 Antisense, RP_Baylor_103167, Mouse strain C57BL/6J (56 days, male) 8.0

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