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SLC36A1
HPA
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  • SLC36A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC36A1
Synonyms LYAAT-1, PAT1, TRAMD3
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 36 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q33.1
Chromosome location (bp) 151437046 - 151492379
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000123643 (version 109)
Entrez gene 206358
HGNC HGNC:18761
UniProt Q7Z2H8 (UniProt - Evidence at protein level)
neXtProt NX_Q7Z2H8
GeneCards SLC36A1
Antibodypedia SLC36A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Electrogenic proton/amino acid symporter with selectivity for small apolar L-amino acids, their D-enantiomers and selected amino acid derivatives such as 4-aminobutanoate/GABA 1, 2, 3. May be involved in the efflux from the lysosomal compartment of neutral amino acids resulting from proteolysis (By similarity). May play a role in specifying sites for exocytosis in neurons (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Amino-acid transport, Symport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the eukaryote-specific amino acid/auxin permease (AAAP) 1 transporter family. The encoded protein functions as a proton-dependent, small amino acid transporter. This gene is clustered with related family members on chromosome 5q33.1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC36A1-201
ENSP00000243389
ENST00000243389
Q7Z2H8
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003333 [amino acid transmembrane transport]
GO:0005280 [amino acid:proton symporter activity]
GO:0005297 [proline:proton symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015078 [proton transmembrane transporter activity]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015175 [neutral amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015180 [L-alanine transmembrane transporter activity]
GO:0015187 [glycine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0015804 [neutral amino acid transport]
GO:0015808 [L-alanine transport]
GO:0015816 [glycine transport]
GO:0015824 [proline transport]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0032328 [alanine transport]
GO:0035524 [proline transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
Show all
476 aa
53.1 kDa
No >9
SLC36A1-202
ENSP00000395640
ENST00000429484
Q7Z2H8
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003333 [amino acid transmembrane transport]
GO:0005280 [amino acid:proton symporter activity]
GO:0005297 [proline:proton symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015180 [L-alanine transmembrane transporter activity]
GO:0015187 [glycine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0015808 [L-alanine transport]
GO:0015816 [glycine transport]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0032328 [alanine transport]
GO:0035524 [proline transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
Show all
243 aa
27.3 kDa
No 5
SLC36A1-203
ENSP00000428738
ENST00000517628
H0YB60
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
145 aa
16.5 kDa
No 3
SLC36A1-204
ENSP00000427804
ENST00000517945
E5RG64
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
70 aa
7.7 kDa
No 0
SLC36A1-205
ENSP00000428471
ENST00000519829
E5RI40
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
71 aa
7.8 kDa
No 0
SLC36A1-206
ENSP00000429796
ENST00000520111
E5RHG5
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
99 aa
10.6 kDa
No 2
SLC36A1-207
ENSP00000428140
ENST00000520701
Q7Z2H8
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003333 [amino acid transmembrane transport]
GO:0005280 [amino acid:proton symporter activity]
GO:0005297 [proline:proton symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015180 [L-alanine transmembrane transporter activity]
GO:0015187 [glycine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0015808 [L-alanine transport]
GO:0015816 [glycine transport]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0032328 [alanine transport]
GO:0035524 [proline transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
Show all
476 aa
53.1 kDa
No >9
SLC36A1-209
ENSP00000430305
ENST00000521925
E7EW39
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
388 aa
43.7 kDa
No 8
SLC36A1-211
ENSP00000480948
ENST00000616007
Q7Z2H8
[Direct mapping] Proton-coupled amino acid transporter 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003333 [amino acid transmembrane transport]
GO:0005280 [amino acid:proton symporter activity]
GO:0005297 [proline:proton symporter activity]
GO:0005368 [taurine transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006865 [amino acid transport]
GO:0015171 [amino acid transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015180 [L-alanine transmembrane transporter activity]
GO:0015187 [glycine transmembrane transporter activity]
GO:0015193 [L-proline transmembrane transporter activity]
GO:0015293 [symporter activity]
GO:0015734 [taurine transport]
GO:0015808 [L-alanine transport]
GO:0015816 [glycine transport]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0022858 [alanine transmembrane transporter activity]
GO:0032328 [alanine transport]
GO:0035524 [proline transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
Show all
386 aa
43.5 kDa
No 8

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