MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.0 nTPM
HPA Brain:26.9 nTPM
GTEx:104.0 nTPM
FANTOM5:404.9 Scaled Tags Per Million
Pig:196.1 nTPM
Mouse:521.2 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2411 Female, age 72, unknown 27.3
2019 Male, age 18, unknown 25.1
1870 Female, age 42, unknown 23.1
2219 Male, age 76, both hemispheres 20.6
2828 Female, age 72, unknown 20.5
1827 Male, age 72, unknown 19.9
1830 Male, age 51, unknown 18.9
2666 Male, age 74, left hemisphere 18.6
1833 Male, age 53, unknown 18.1
2586 Male, age 75, left hemisphere 16.7
Dorsal raphe nucleus
nTPM: 21.9
2047 Male, age 72, unknown 23.8
2298 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 22.4
2750 Male, age 76, both hemispheres 20.7
2016 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 22.2
1890 Male, age 53, unknown 24.4
2097 Female, age 72, unknown 23.8
1848 Female, age 42, unknown 22.9
2849 Male, age 72, unknown 17.6
Median raphe nucleus
nTPM: 19.7
2220 Male, age 76, midline 19.7
Periaquaductal grey, anterior
nTPM: 21.8
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 21.4
1795 Male, age 51, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 20.1
1840 Male, age 53, unknown 24.8
2464 Female, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 18.5
1831 Male, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 19.1
2053 Male, age 18, unknown 21.8
2140 Male, age 76, both hemispheres 17.9
2272 Male, age 74, both hemispheres 17.4
Pretectal area
nTPM: 21.5
2007 Male, age 72, unknown 27.8
1817 Female, age 42, unknown 25.8
1816 Male, age 51, unknown 24.2
1944 Female, age 72, unknown 22.7
2316 Male, age 76, right hemisphere 21.4
2667 Female, age 75, unknown 21.0
1815 Male, age 53, unknown 20.0
2273 Male, age 74, both hemispheres 20.0
2224 Female, age 72, unknown 19.4
2825 Male, age 18, unknown 18.0
2407 Male, age 75, both hemispheres 16.7
Red nucleus
nTPM: 24.8
1821 Female, age 72, unknown 29.5
1865 Male, age 51, unknown 28.8
2503 Female, age 72, unknown 28.2
2769 Male, age 72, unknown 26.2
1904 Male, age 53, unknown 25.9
1954 Female, age 42, unknown 25.5
2227 Male, age 72, unknown 24.8
2725 Female, age 75, unknown 23.7
2588 Male, age 74, left hemisphere 23.3
2785 Male, age 18, unknown 22.9
2823 Male, age 76, right hemisphere 22.5
2584 Male, age 75, left hemisphere 16.2
Substantia nigra
nTPM: 26.9
2409 Female, age 72, unknown 37.8
1916 Female, age 42, unknown 34.4
1851 Male, age 51, unknown 33.6
1889 Female, age 72, unknown 27.0
2241 Male, age 72, unknown 25.2
1941 Male, age 53, unknown 24.9
2590 Female, age 75, unknown 24.6
2665 Male, age 74, both hemispheres 22.7
2699 Male, age 18, unknown 21.3
2583 Male, age 75, right hemisphere 17.8
Superior colliculus
nTPM: 20.7
2587 Male, age 74, left hemisphere 26.4
2668 Female, age 75, unknown 23.3
1895 Male, age 76, right hemisphere 22.6
1913 Female, age 42, unknown 21.0
2087 Female, age 72, unknown 20.8
2261 Male, age 18, unknown 20.5
1995 Male, age 72, unknown 20.3
1796 Male, age 53, unknown 20.1
1839 Male, age 51, unknown 17.1
2664 Male, age 75, both hemispheres 14.7
Ventral tegmental area
nTPM: 26.4
2410 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 29.0
2223 Female, age 72, unknown 25.6
2218 Male, age 76, both hemispheres 23.2
2021 Male, age 53, unknown 22.7
1942 Male, age 51, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 104.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.0
Samples: 139

Max nTPM: 225.6
Min nTPM: 33.1
Std nTPM: 33.0
Median nTPM: 94.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 225.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 209.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 188.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 184.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 177.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 168.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 167.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 164.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 163.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 156.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 155.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 404.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 404.9
FF:10158-103A5 76 years, female 404.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 196.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 164.8
Samples: 4

Max nTPM: 241.0
Min nTPM: 129.9
Sample A Female 241.0
Sample B Female 156.6
Sample C Male 131.5
Sample D Male 129.9
Midbrain
nTPM: 180.8
Samples: 4

Max nTPM: 270.3
Min nTPM: 126.3
Sample A Female 270.3
Sample B Female 170.6
Sample C Male 156.0
Sample D Male 126.3
Periaqueductal gray
nTPM: 133.2
Samples: 3

Max nTPM: 145.8
Min nTPM: 113.6
Sample B Female 145.8
Sample C Male 140.1
Sample D Male 113.6
Superior colliculi
nTPM: 196.1
Samples: 4

Max nTPM: 242.2
Min nTPM: 144.7
Sample A Female 242.2
Sample B Female 209.3
Sample C Male 188.3
Sample D Male 144.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 521.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 521.2
Samples: 4

Max nTPM: 609.5
Min nTPM: 431.0
Sample A Male 609.5
Sample B Male 482.0
Sample C Female 431.0
Sample D Female 562.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69173370 Antisense, RP_050329_01_E03, Mouse strain C57BL/6J (56 days, male) 3.4

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