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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:90.5 nTPM
HPA Brain:29.8 nTPM
GTEx:90.5 nTPM
FANTOM5:555.7 Scaled Tags Per Million
Pig:199.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 26.5
1981 Female, age 72, midline 32.7
2048 Male, age 55, midline 30.0
2194 Female, age 79, both hemispheres 26.4
2565 Male, age 75, midline 23.7
2816 Male, age 47, midline 19.7
Cervical spinal cord, dorsal horn
nTPM: 28.4
2173 Female, age 72, unknown 36.6
2069 Male, age 47, both hemispheres 36.2
2296 Male, age 66, both hemispheres 31.2
1877 Male, age 55, unknown 24.5
2297 Male, age 75, both hemispheres 22.2
2721 Male, age 90, both hemispheres 19.7
Cervical spinal cord, ventral horn
nTPM: 29.8
2098 Female, age 72, unknown 35.6
2295 Male, age 66, both hemispheres 34.9
2809 Male, age 90, both hemispheres 32.3
2480 Male, age 75, both hemispheres 30.9
2068 Male, age 55, unknown 26.1
2820 Female, age 79, both hemispheres 18.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 90.5
Samples: 159

Max nTPM: 211.2
Min nTPM: 23.4
Std nTPM: 29.1
Median nTPM: 85.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 211.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 181.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 174.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 164.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 149.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 148.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 142.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 139.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 138.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 133.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 128.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 126.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 121.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 118.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 117.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 115.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 114.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 113.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 112.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 111.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 111.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 110.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 110.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 109.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 109.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 108.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 108.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 106.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 103.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 103.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 103.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 103.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 102.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 102.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 100.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 100.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 98.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 98.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 97.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 97.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 97.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 97.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 95.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 94.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 93.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 92.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 92.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 91.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 91.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 91.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 90.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 90.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 89.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 89.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 87.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 87.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 87.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 86.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 86.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 85.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 85.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 85.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 85.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 85.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 84.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 84.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 84.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 84.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 83.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 82.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 82.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 82.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 82.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 81.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 81.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 80.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 80.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 79.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 79.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 78.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 78.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 78.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 77.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 77.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 77.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 77.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 76.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 76.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 76.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 75.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 75.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 75.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 73.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 73.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 72.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 72.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 71.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 71.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 71.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 70.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 70.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 70.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 70.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 69.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 69.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 69.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 68.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 68.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 67.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 67.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 66.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 65.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 64.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 64.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 64.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 61.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 60.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 59.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 55.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 53.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 51.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 48.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 46.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 46.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 45.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 44.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 43.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 40.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 23.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

555.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 555.7
FF:10181-103D1 60 years, female 747.7
FF:10159-103A6 76 years, female 363.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 191.0
Samples: 4

Max nTPM: 266.9
Min nTPM: 138.6
Sample A Female 171.8
Sample B Female 186.5
Sample C Male 266.9
Sample D Male 138.6
Ventral spinal cord
nTPM: 199.1
Samples: 4

Max nTPM: 225.2
Min nTPM: 178.5
Sample A Female 178.5
Sample B Female 225.2
Sample C Male 206.7
Sample D Male 186.0

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