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PEPD
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • PEPD
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PEPD
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Peptidase D
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.11
Chromosome location (bp) 33386950 - 33521823
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

15
Ensembl ENSG00000124299 (version 109)
Entrez gene 5184
HGNC HGNC:8840
UniProt P12955 (UniProt - Evidence at protein level)
neXtProt NX_P12955
GeneCards PEPD
Antibodypedia PEPD antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Dipeptidase that catalyzes the hydrolysis of dipeptides with a prolyl (Xaa-Pro) or hydroxyprolyl residue in the C-terminal position 1, 2. The preferred dipeptide substrate is Gly-Pro, but other Xaa-Pro dipeptides, such as Ala-Pro, Met-Pro, Phe-Pro, Val-Pro and Leu-Pro, can be cleaved 3. Plays an important role in collagen metabolism because the high level of iminoacids in collagen 4.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Dipeptidase, Hydrolase, Metalloprotease, Protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Collagen degradation
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Manganese, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the peptidase family. The protein forms a homodimer that hydrolyzes dipeptides or tripeptides with C-terminal proline or hydroxyproline residues. The enzyme serves an important role in the recycling of proline, and may be rate limiting for the production of collagen. Mutations in this gene result in prolidase deficiency, which is characterized by the excretion of large amount of di- and tri-peptides containing proline. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Oct 2009]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PEPD-201
ENSP00000244137
ENST00000244137
P12955
[Direct mapping] Xaa-Pro dipeptidase
Show all
A0A140VJR2
[Target identity:100%; Query identity:100%] Testicular tissue protein Li 138
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Metallopeptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004181 [metallocarboxypeptidase activity]
GO:0005515 [protein binding]
GO:0006508 [proteolysis]
GO:0006520 [cellular amino acid metabolic process]
GO:0008233 [peptidase activity]
GO:0008237 [metallopeptidase activity]
GO:0016787 [hydrolase activity]
GO:0016805 [dipeptidase activity]
GO:0030145 [manganese ion binding]
GO:0030574 [collagen catabolic process]
GO:0046872 [metal ion binding]
GO:0070006 [metalloaminopeptidase activity]
GO:0070062 [extracellular exosome]
GO:0102009 [proline dipeptidase activity]
Show all
493 aa
54.5 kDa
No 0
PEPD-202
ENSP00000380226
ENST00000397032
P12955
[Direct mapping] Xaa-Pro dipeptidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Metallopeptidases
Metabolic proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004181 [metallocarboxypeptidase activity]
GO:0005515 [protein binding]
GO:0006508 [proteolysis]
GO:0006520 [cellular amino acid metabolic process]
GO:0008233 [peptidase activity]
GO:0008237 [metallopeptidase activity]
GO:0016787 [hydrolase activity]
GO:0016805 [dipeptidase activity]
GO:0030145 [manganese ion binding]
GO:0030574 [collagen catabolic process]
GO:0046872 [metal ion binding]
GO:0070006 [metalloaminopeptidase activity]
GO:0070062 [extracellular exosome]
GO:0102009 [proline dipeptidase activity]
Show all
452 aa
49.7 kDa
No 0
PEPD-203
ENSP00000391890
ENST00000436370
P12955
[Direct mapping] Xaa-Pro dipeptidase
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Metallopeptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004181 [metallocarboxypeptidase activity]
GO:0005515 [protein binding]
GO:0006508 [proteolysis]
GO:0006520 [cellular amino acid metabolic process]
GO:0008233 [peptidase activity]
GO:0008237 [metallopeptidase activity]
GO:0016787 [hydrolase activity]
GO:0016805 [dipeptidase activity]
GO:0030145 [manganese ion binding]
GO:0030574 [collagen catabolic process]
GO:0046872 [metal ion binding]
GO:0070006 [metalloaminopeptidase activity]
GO:0070062 [extracellular exosome]
GO:0102009 [proline dipeptidase activity]
Show all
429 aa
47.3 kDa
No 0
PEPD-204
ENSP00000468516
ENST00000588328
K7ES25
[Direct mapping] Xaa-Pro dipeptidase
Show all
Metabolic proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0046872 [metal ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
515 aa
56.7 kDa
No 0
PEPD-213
ENSP00000498950
ENST00000651646
A0A494C194
[Direct mapping] Xaa-Pro dipeptidase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
224 aa
25.2 kDa
No 0
PEPD-214
ENSP00000498922
ENST00000651901
A0A494C165
[Direct mapping] Xaa-Pro dipeptidase
Show all
Metabolic proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
GO:0030145 [manganese ion binding]
GO:0046872 [metal ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
523 aa
57.8 kDa
No 0
PEPD-215
ENSP00000513682
ENST00000698359
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
478 aa
52.8 kDa
No 0
PEPD-216
ENSP00000513683
ENST00000698360
Metabolic proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
510 aa
56.5 kDa
No 0
PEPD-217
ENSP00000513684
ENST00000698361
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
495 aa
54.6 kDa
No 0
PEPD-218
ENSP00000513685
ENST00000698362
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
361 aa
39.8 kDa
No 0
PEPD-222
ENSP00000513713
ENST00000698426
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
386 aa
42.8 kDa
No 0
PEPD-223
ENSP00000513714
ENST00000698427
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
507 aa
56 kDa
No 0
PEPD-224
ENSP00000513715
ENST00000698428
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
386 aa
42.8 kDa
No 0
PEPD-228
ENSP00000513718
ENST00000698432
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030145 [manganese ion binding]
GO:0070006 [metalloaminopeptidase activity]
Show all
430 aa
47.7 kDa
No 0
PEPD-231
ENSP00000513719
ENST00000698435
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of amino acid metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
195 aa
21.7 kDa
No 0

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