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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:472.3 nTPM
GTEx:472.3 nTPM
FANTOM5:6.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041529Antibody HPA041797
Squamous epithelial cells HighHigh

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

472.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 472.3
Samples: 156

Max nTPM: 2012.0
Min nTPM: 0.4
Std nTPM: 458.2
Median nTPM: 362.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2012.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1587.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1545.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1488.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1478.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1439.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1436.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1304.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1288.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1250.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1158.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1153.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1127.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1112.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1109.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1107.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1093.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1085.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1081.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1076.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1060.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1059.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1051.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1044.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1041.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1040.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1016.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 973.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 950.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 949.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 916.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 892.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 889.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 868.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 858.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 847.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 825.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 820.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 818.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 814.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 806.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 780.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 771.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 730.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 729.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 726.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 720.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 704.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 691.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 687.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 684.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 677.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 673.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 672.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 670.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 667.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 667.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 623.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 607.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 606.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 594.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 576.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 524.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 490.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 487.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 478.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 472.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 470.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 451.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 447.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 408.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 380.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 380.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 379.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 379.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 372.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 371.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 366.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 359.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 352.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 350.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 348.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 335.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 334.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 325.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 318.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 310.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 297.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 251.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 240.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 222.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 217.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 210.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 209.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 202.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 194.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 188.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 178.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 139.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 129.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 116.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 105.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 88.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 86.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 85.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 75.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 69.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 62.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 55.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 54.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 53.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 46.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 41.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 38.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 38.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 35.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 35.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 34.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 33.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 31.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 26.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 16.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 15.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 15.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 13.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 13.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 10.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 6.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 5.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 3.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1.8
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 0.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 0.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 6.4
FF:10204-103F6 68 years, female 6.4

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