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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
296.8
nTPM
FANTOM5:
350.6
Scaled Tags Per Million
Pig:
83.6
nTPM
Allen mouse:
12.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
296.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 112.1
2301
Female, age 85, both hemispheres
140.7
1984
Male, age 76, both hemispheres
127.0
2188
Female, age 91, both hemispheres
102.6
2090
Male, age 80, both hemispheres
78.1
Dorsal cochlear nucleus nTPM: 104.6
2058
Male, age 76, both hemispheres
129.0
2370
Male, age 61, both hemispheres
121.0
2187
Female, age 91, both hemispheres
109.8
2802
Male, age 74, right hemisphere
88.3
2378
Male, age 80, both hemispheres
75.0
Dorsal tegmental nucleus nTPM: 99.8
2083
Male, age 80, both hemispheres
115.0
1936
Male, age 76, left hemisphere
107.8
2358
Male, age 61, both hemispheres
105.7
2326
Male, age 74, both hemispheres
70.5
Dorsolateral tegmental area nTPM: 82.4
2141
Male, age 76, both hemispheres
130.1
2654
Male, age 80, both hemispheres
105.1
2751
Female, age 85, both hemispheres
81.1
2360
Male, age 74, both hemispheres
56.8
2337
Male, age 61, both hemispheres
38.8
Kolliker-Fuse nucleus nTPM: 134.2
2793
Female, age 91, left hemisphere
184.8
2163
Male, age 80, both hemispheres
138.7
2315
Male, age 76, right hemisphere
79.2
Lateral lemniscal nuclei nTPM: 255.6
2453
Male, age 74, right hemisphere
336.6
2169
Male, age 76, both hemispheres
275.2
2036
Male, age 80, both hemispheres
241.7
2320
Female, age 91, left hemisphere
214.0
2746
Female, age 85, left hemisphere
210.2
Lateral parabrachial nucleus nTPM: 140.1
2139
Female, age 85, right hemisphere
246.5
2790
Male, age 61, both hemispheres
142.7
2013
Male, age 80, both hemispheres
123.1
2792
Male, age 76, both hemispheres
48.1
Lateral vestibular nucleus nTPM: 119.9
2184
Male, age 76, both hemispheres
140.1
2311
Male, age 80, both hemispheres
99.7
Locus coeruleus nTPM: 145.1
2720
Male, age 74, both hemispheres
179.4
2123
Female, age 91, both hemispheres
174.7
2162
Male, age 80, both hemispheres
148.7
2317
Female, age 72, unknown
136.0
1980
Male, age 76, both hemispheres
129.5
2788
Male, age 74, unknown
125.6
2014
Male, age 55, unknown
121.5
Medial parabrachial nucleus nTPM: 119.4
2156
Male, age 61, both hemispheres
155.5
2854
Male, age 80, both hemispheres
150.5
2786
Male, age 76, both hemispheres
120.1
2170
Female, age 91, both hemispheres
88.1
2463
Female, age 85, right hemisphere
82.9
Medial periolivary nuclei nTPM: 236.1
2171
Female, age 85, both hemispheres
346.2
2063
Male, age 76, both hemispheres
288.1
2791
Male, age 74, right hemisphere
226.7
2458
Female, age 91, both hemispheres
188.1
2081
Male, age 80, both hemispheres
131.4
Motor facial nucleus nTPM: 256.4
2062
Male, age 76, both hemispheres
311.3
2327
Male, age 80, both hemispheres
303.0
2795
Female, age 91, both hemispheres
300.0
2365
Male, age 74, right hemisphere
267.8
2697
Female, age 85, both hemispheres
232.5
2126
Male, age 61, both hemispheres
123.7
Motor trigeminal nucleus nTPM: 184.5
2560
Male, age 74, both hemispheres
256.6
2079
Male, age 80, both hemispheres
235.4
2335
Male, age 61, both hemispheres
150.2
2321
Female, age 91, both hemispheres
149.1
2309
Male, age 76, both hemispheres
131.1
Nuclei of the trapezoid body nTPM: 289.9
2735
Female, age 85, both hemispheres
368.4
2159
Male, age 61, both hemispheres
315.2
1983
Male, age 76, both hemispheres
283.3
2368
Female, age 91, both hemispheres
273.0
2166
Male, age 80, both hemispheres
209.7
Nucleus raphe magnus nTPM: 296.8
2172
Female, age 85, both hemispheres
418.9
2160
Male, age 61, both hemispheres
345.4
2455
Male, age 74, both hemispheres
330.5
2328
Male, age 80, both hemispheres
248.1
2459
Female, age 91, both hemispheres
233.2
2051
Male, age 76, both hemispheres
204.8
Paramedian reticular nucleus nTPM: 138.9
2050
Female, age 85, both hemispheres
215.1
2313
Male, age 61, both hemispheres
159.8
2057
Male, age 80, both hemispheres
116.7
2052
Male, age 76, both hemispheres
63.9
Pedunculopontine tegmental nucleus nTPM: 108.2
1921
Female, age 85, both hemispheres
122.1
2334
Male, age 80, both hemispheres
107.3
2338
Male, age 61, both hemispheres
95.1
Pontine nuclei nTPM: 220.9
2787
Female, age 85, both hemispheres
381.5
1968
Male, age 76, left hemisphere
275.7
2727
Male, age 61, right hemisphere
260.1
1863
Male, age 55, unknown
214.5
2109
Female, age 72, unknown
185.6
2115
Male, age 80, left hemisphere
166.6
2454
Male, age 74, left hemisphere
162.6
2319
Female, age 91, both hemispheres
121.0
Pontine raphe nucleus nTPM: 186.5
2122
Female, age 85, midline
239.7
2853
Male, age 76, midline
133.2
Posteroventral cochlear nucleus nTPM: 83.8
2752
Female, age 85, both hemispheres
171.0
2070
Male, age 76, both hemispheres
108.4
2371
Male, age 61, both hemispheres
96.1
2341
Male, age 80, both hemispheres
37.3
2135
Female, age 91, both hemispheres
5.9
Principal sensory trigeminal nucleus nTPM: 212.6
2158
Male, age 61, both hemispheres
314.6
2008
Male, age 80, left hemisphere
236.6
2367
Female, age 91, left hemisphere
172.6
2324
Male, age 76, both hemispheres
126.7
Reticular pontine nucleus, caudal nTPM: 192.6
2332
Male, age 80, right hemisphere
302.4
2457
Female, age 91, both hemispheres
193.4
2092
Male, age 76, both hemispheres
186.1
2559
Male, age 74, both hemispheres
88.5
Reticular pontine nucleus, oral nTPM: 146.5
2361
Male, age 74, both hemispheres
200.8
2012
Female, age 85, both hemispheres
174.6
2366
Female, age 91, both hemispheres
154.8
2167
Male, age 76, both hemispheres
114.6
1939
Male, age 80, both hemispheres
87.8
Reticulotegmental nucleus nTPM: 158.6
2325
Male, age 76, both hemispheres
194.7
2452
Male, age 74, both hemispheres
155.9
2333
Male, age 80, both hemispheres
142.8
2322
Female, age 91, both hemispheres
140.9
Spinal trigeminal nucleus, oral nTPM: 137.2
1978
Male, age 76, both hemispheres
153.6
2737
Female, age 85, both hemispheres
136.6
2164
Male, age 80, both hemispheres
121.4
Subcoeruleus area nTPM: 154.7
2089
Male, age 76, left hemisphere
233.2
2323
Female, age 91, left hemisphere
178.4
1958
Male, age 80, both hemispheres
175.9
2451
Male, age 74, both hemispheres
124.8
2369
Female, age 85, left hemisphere
61.3
Superior olive nTPM: 230.2
1875
Female, age 85, both hemispheres
279.2
2561
Female, age 91, both hemispheres
264.8
2329
Male, age 80, right hemisphere
230.4
2364
Male, age 74, right hemisphere
192.2
2020
Male, age 76, both hemispheres
184.5
Ventral periolivary nuclei nTPM: 271.4
2130
Female, age 85, both hemispheres
358.0
2794
Female, age 91, left hemisphere
287.2
2165
Male, age 80, both hemispheres
280.5
2023
Male, age 76, both hemispheres
159.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 192.7
2449
Male, age 74, both hemispheres
308.8
1959
Male, age 76, both hemispheres
213.3
2161
Male, age 80, both hemispheres
202.5
2456
Female, age 91, both hemispheres
188.7
2840
Female, age 85, both hemispheres
150.7
2359
Male, age 61, both hemispheres
91.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.6
Pig sample
Sample description
nTPM
Pons nTPM: 83.6
Samples: 4
Max nTPM: 112.5
Min nTPM: 67.8
Sample A
Female
112.5
Sample B
Female
69.1
Sample C
Male
67.8
Sample D
Male
85.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
