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PACSIN1
HPA
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  • PACSIN1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PACSIN1
Synonyms SDPI
Gene descriptioni

Full gene name according to HGNC.

Protein kinase C and casein kinase substrate in neurons 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband p21.31
Chromosome location (bp) 34466061 - 34535229
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000124507 (version 109)
Entrez gene 29993
HGNC HGNC:8570
UniProt Q9BY11 (UniProt - Evidence at protein level)
neXtProt NX_Q9BY11
GeneCards PACSIN1
Antibodypedia PACSIN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in the reorganization of the microtubule cytoskeleton via its interaction with MAPT; this decreases microtubule stability and inhibits MAPT-induced microtubule polymerization. Plays a role in cellular transport processes by recruiting DNM1, DNM2 and DNM3 to membranes. Plays a role in the reorganization of the actin cytoskeleton and in neuron morphogenesis via its interaction with COBL and WASL, and by recruiting COBL to the cell cortex. Plays a role in the regulation of neurite formation, neurite branching and the regulation of neurite length. Required for normal synaptic vesicle endocytosis; this process retrieves previously released neurotransmitters to accommodate multiple cycles of neurotransmission. Required for normal excitatory and inhibitory synaptic transmission (By similarity). Binds to membranes via its F-BAR domain and mediates membrane tubulation.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Endocytosis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables phospholipid binding activity. Involved in plasma membrane tubulation. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PACSIN1-201
ENSP00000244458
ENST00000244458
Q9BY11
[Direct mapping] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Q5TZC3
[Target identity:100%; Query identity:100%] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0007010 [cytoskeleton organization]
GO:0007015 [actin filament organization]
GO:0008092 [cytoskeletal protein binding]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0030100 [regulation of endocytosis]
GO:0030137 [COPI-coated vesicle]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032587 [ruffle membrane]
GO:0042802 [identical protein binding]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0045806 [negative regulation of endocytosis]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048666 [neuron development]
GO:0048812 [neuron projection morphogenesis]
GO:0072657 [protein localization to membrane]
GO:0072659 [protein localization to plasma membrane]
GO:0097320 [plasma membrane tubulation]
GO:0098684 [photoreceptor ribbon synapse]
GO:0098833 [presynaptic endocytic zone]
GO:1900006 [positive regulation of dendrite development]
Show all
444 aa
51 kDa
No 0
PACSIN1-202
ENSP00000363155
ENST00000374043
F6U236
[Direct mapping] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0007015 [actin filament organization]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032587 [ruffle membrane]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0048666 [neuron development]
GO:0097320 [plasma membrane tubulation]
Show all
402 aa
46.1 kDa
No 0
PACSIN1-206
ENSP00000439639
ENST00000538621
Q9BY11
[Direct mapping] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Q5TZC3
[Target identity:100%; Query identity:100%] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0007010 [cytoskeleton organization]
GO:0007015 [actin filament organization]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0030100 [regulation of endocytosis]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032587 [ruffle membrane]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048666 [neuron development]
GO:0048812 [neuron projection morphogenesis]
GO:0072657 [protein localization to membrane]
GO:0072659 [protein localization to plasma membrane]
GO:0097320 [plasma membrane tubulation]
GO:1900006 [positive regulation of dendrite development]
Show all
444 aa
51 kDa
No 0
PACSIN1-207
ENSP00000484060
ENST00000620693
Q9BY11
[Direct mapping] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Q5TZC3
[Target identity:100%; Query identity:100%] Protein kinase C and casein kinase substrate in neurons protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005543 [phospholipid binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006897 [endocytosis]
GO:0007010 [cytoskeleton organization]
GO:0007015 [actin filament organization]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0030100 [regulation of endocytosis]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032587 [ruffle membrane]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048488 [synaptic vesicle endocytosis]
GO:0048666 [neuron development]
GO:0048812 [neuron projection morphogenesis]
GO:0072657 [protein localization to membrane]
GO:0072659 [protein localization to plasma membrane]
GO:0097320 [plasma membrane tubulation]
GO:1900006 [positive regulation of dendrite development]
Show all
444 aa
51 kDa
No 0

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