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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:15.5 nTPM
HPA Brain:70.6 nTPM
GTEx:15.5 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:23.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 49.9
2194 Female, age 79, both hemispheres 77.1
1981 Female, age 72, midline 54.0
2048 Male, age 55, midline 47.1
2816 Male, age 47, midline 44.3
2565 Male, age 75, midline 27.1
Cervical spinal cord, dorsal horn
nTPM: 70.6
2297 Male, age 75, both hemispheres 133.3
2721 Male, age 90, both hemispheres 104.2
1877 Male, age 55, unknown 77.8
2069 Male, age 47, both hemispheres 60.7
2173 Female, age 72, unknown 42.4
2296 Male, age 66, both hemispheres 5.4
Cervical spinal cord, ventral horn
nTPM: 55.6
2820 Female, age 79, both hemispheres 101.9
2068 Male, age 55, unknown 89.4
2480 Male, age 75, both hemispheres 55.7
2295 Male, age 66, both hemispheres 44.7
2809 Male, age 90, both hemispheres 27.5
2098 Female, age 72, unknown 14.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 15.5
Samples: 159

Max nTPM: 96.5
Min nTPM: 0.5
Std nTPM: 18.2
Median nTPM: 8.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 83.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 82.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 66.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 58.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 54.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 54.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 53.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 52.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 45.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 45.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 44.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 41.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 37.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 33.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 33.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 32.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 32.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 32.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 32.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 31.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 30.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 29.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 29.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 27.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 27.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 26.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 26.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 26.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 26.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 24.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 23.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 22.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 22.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 21.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 21.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 21.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 20.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 19.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 18.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 18.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 17.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 17.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 17.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 17.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 17.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 16.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 16.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 16.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 16.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 15.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 15.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 14.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 14.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 14.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 13.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 13.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 12.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 12.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 12.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 12.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 12.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 12.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 11.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 9.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 9.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 9.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 9.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 9.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 9.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 9.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 8.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 8.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 7.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 7.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 7.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 7.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 6.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 6.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 6.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 6.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 6.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 6.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 6.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 6.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 5.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 5.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 5.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 4.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 4.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 4.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 4.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 3.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 3.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 3.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 3.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 3.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 0.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 0.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 0.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 0.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 0.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 0.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 0.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 0.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 0.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 0.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 0.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 0.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.1
FF:10181-103D1 60 years, female 34.2
FF:10159-103A6 76 years, female 15.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 23.2
Samples: 4

Max nTPM: 43.6
Min nTPM: 6.3
Sample A Female 43.6
Sample B Female 11.1
Sample C Male 6.3
Sample D Male 31.9
Ventral spinal cord
nTPM: 18.3
Samples: 4

Max nTPM: 22.0
Min nTPM: 12.8
Sample A Female 22.0
Sample B Female 17.5
Sample C Male 20.8
Sample D Male 12.8

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