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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:120.1 nTPM
HPA Brain:80.2 nTPM
GTEx:120.1 nTPM
FANTOM5:82.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 74.8
2816 Male, age 47, midline 82.7
2565 Male, age 75, midline 76.7
2048 Male, age 55, midline 72.2
1981 Female, age 72, midline 71.9
2194 Female, age 79, both hemispheres 70.4
Cervical spinal cord, dorsal horn
nTPM: 68.1
2173 Female, age 72, unknown 80.3
2296 Male, age 66, both hemispheres 76.5
2069 Male, age 47, both hemispheres 68.2
2297 Male, age 75, both hemispheres 61.9
1877 Male, age 55, unknown 61.5
2721 Male, age 90, both hemispheres 59.9
Cervical spinal cord, ventral horn
nTPM: 80.2
2098 Female, age 72, unknown 87.4
2809 Male, age 90, both hemispheres 85.9
2820 Female, age 79, both hemispheres 78.9
2295 Male, age 66, both hemispheres 77.6
2068 Male, age 55, unknown 76.4
2480 Male, age 75, both hemispheres 74.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 120.1
Samples: 159

Max nTPM: 184.1
Min nTPM: 55.5
Std nTPM: 22.3
Median nTPM: 120.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 184.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 178.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 176.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 173.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 161.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 159.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 157.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 156.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 155.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 154.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 153.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 153.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 151.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 149.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 149.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 148.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 147.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 147.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 147.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 145.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 145.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 142.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 140.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 140.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 139.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 137.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 136.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 135.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 135.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 135.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 135.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 135.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 134.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 134.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 134.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 133.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 133.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 132.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 132.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 132.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 132.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 130.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 130.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 129.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 128.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 127.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 127.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 127.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 126.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 126.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 125.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 125.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 125.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 125.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 124.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 124.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 123.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 122.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 122.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 122.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 121.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 121.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 121.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 121.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 120.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 120.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 120.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 120.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 120.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 119.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 119.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 118.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 118.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 117.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 117.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 117.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 117.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 116.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 116.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 116.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 116.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 116.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 116.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 116.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 114.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 114.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 113.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 113.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 113.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 111.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 111.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 111.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 111.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 110.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 110.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 110.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 109.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 106.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 106.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 105.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 105.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 105.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 104.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 103.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 101.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 100.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 100.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 100.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 100.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 99.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 99.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 98.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 98.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 98.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 98.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 98.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 98.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 97.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 97.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 97.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 96.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 94.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 94.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 94.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 93.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 93.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 92.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 92.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 91.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 84.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 81.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 81.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 76.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 76.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 73.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 70.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 82.5
FF:10159-103A6 76 years, female 99.0
FF:10181-103D1 60 years, female 66.0

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