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  • CDKN1A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:30.0 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:7.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB000064Antibody CAB069401
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 173.2
Min nTPM: 1.9
Std nTPM: 31.7
Median nTPM: 17.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 173.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 159.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 156.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 149.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 142.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 139.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 138.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 131.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 121.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 117.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 105.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 94.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 91.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 86.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 84.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 82.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 81.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 80.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 80.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 79.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 73.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 71.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 69.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 69.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 65.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 65.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 65.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 62.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 59.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 58.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 58.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 56.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 56.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 55.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 55.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 52.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 52.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 51.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 50.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 50.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 50.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 49.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 49.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 49.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 47.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 46.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 45.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 45.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 42.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 42.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 41.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 41.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 41.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 41.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 41.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 41.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 40.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 38.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 37.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 37.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 36.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 35.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 35.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 35.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 34.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 33.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 32.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 32.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 31.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 31.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 31.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 31.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 31.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 30.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 30.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 29.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 29.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 29.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 29.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 29.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 29.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 28.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 28.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 27.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 27.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 26.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 26.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 26.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 26.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 26.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 25.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 24.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 24.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 24.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 24.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 22.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 22.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 22.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 22.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 22.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 21.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 21.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 21.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 21.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 21.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 21.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 20.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 20.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 19.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 18.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 17.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 17.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 17.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 17.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 16.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 16.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 16.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 16.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 15.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 15.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 15.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 14.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 14.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 14.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 14.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 14.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 13.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 13.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 13.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 13.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 13.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 12.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 12.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 12.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 12.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 12.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 12.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 12.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 12.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 12.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 11.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 11.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 11.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 11.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 11.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 11.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 11.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 11.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 11.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 11.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 10.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 10.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 10.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 10.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 10.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 10.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 10.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 10.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 10.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 10.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 10.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 10.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 10.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 10.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 10.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 9.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 9.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 9.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 9.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 9.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 9.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 9.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 9.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 9.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 9.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 8.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 8.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 8.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 8.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 8.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 8.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 8.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 8.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 8.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 7.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 7.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 7.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 7.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 7.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 7.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 7.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 7.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 7.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 7.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 6.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 6.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 6.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 6.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 6.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 6.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 5.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 5.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 5.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 5.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 5.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 5.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 5.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 5.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 4.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 4.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 4.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 4.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 4.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 4.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 4.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 4.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 3.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.0
FF:10164-103B2 76 years, female 70.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.0
Pig sample Sample description nTPM
Caudate
nTPM: 7.0
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.2
Sample A Female 8.8
Sample B Female 8.2
Sample C Male 6.6
Sample D Male 4.2

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