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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:61.8 nTPM
FANTOM5:130.5 Scaled Tags Per Million
Pig:143.4 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.8
Sample id Sample description nTPM
Area postrema
nTPM: 42.6
2054 Male, age 76, both hemispheres 43.7
2306 Male, age 80, both hemispheres 42.5
2799 Male, age 61, both hemispheres 41.8
Dorsal medullary reticular nucleus
nTPM: 48.6
2040 Female, age 85, both hemispheres 61.7
2088 Male, age 76, both hemispheres 42.5
2373 Male, age 61, both hemispheres 41.4
Dorsal motor vagal complex
nTPM: 48.5
2000 Male, age 74, unknown 62.4
2133 Female, age 91, both hemispheres 58.6
2813 Female, age 72, unknown 54.9
2844 Male, age 55, unknown 50.4
2643 Male, age 74, both hemispheres 46.7
2185 Male, age 76, both hemispheres 42.5
2797 Male, age 61, both hemispheres 39.7
2807 Female, age 85, both hemispheres 32.5
Gigantocellular reticular nuclei, medullary
nTPM: 51.2
1876 Female, age 85, both hemispheres 58.8
2462 Male, age 74, both hemispheres 56.8
2387 Female, age 91, both hemispheres 54.9
2022 Male, age 76, right hemisphere 51.5
2314 Male, age 61, both hemispheres 44.3
2310 Male, age 80, both hemispheres 41.1
Gigantocellular reticular nuclei, pars
nTPM: 44.8
2168 Male, age 76, both hemispheres 53.9
2084 Female, age 85, both hemispheres 52.3
2336 Male, age 61, both hemispheres 44.0
2706 Male, age 80, both hemispheres 37.2
2330 Male, age 80, both hemispheres 36.9
Inferior olive
nTPM: 48.9
2563 Male, age 74, both hemispheres 60.7
2085 Female, age 85, both hemispheres 50.6
2178 Male, age 61, both hemispheres 47.9
2379 Male, age 80, both hemispheres 43.9
2628 Female, age 91, both hemispheres 41.6
Lateral medullary reticular nucleus
nTPM: 49.5
2305 Male, age 74, both hemispheres 60.1
2044 Male, age 76, both hemispheres 55.0
2190 Female, age 85, both hemispheres 52.2
2804 Female, age 91, both hemispheres 48.5
2374 Male, age 61, both hemispheres 42.8
2852 Male, age 80, both hemispheres 38.6
Medial olivary nucleus
nTPM: 51.2
2138 Female, age 91, both hemispheres 56.6
1962 Male, age 76, both hemispheres 55.7
1943 Male, age 61, both hemispheres 50.9
2851 Male, age 80, both hemispheres 41.7
Medial vestibular nucleus
nTPM: 57.0
2134 Male, age 76, both hemispheres 59.6
2801 Male, age 74, both hemispheres 58.8
2093 Male, age 80, both hemispheres 58.5
2743 Female, age 85, both hemispheres 57.5
2803 Female, age 91, both hemispheres 56.7
2624 Male, age 61, both hemispheres 50.8
Motor hypoglossal nucleus
nTPM: 49.3
2125 Female, age 91, both hemispheres 61.9
2132 Female, age 85, both hemispheres 53.0
2461 Male, age 61, both hemispheres 47.8
2277 Male, age 76, both hemispheres 44.7
2182 Male, age 80, both hemispheres 39.1
Nucleus ambiguus
nTPM: 43.5
2071 Male, age 76, both hemispheres 57.5
2096 Female, age 85, both hemispheres 29.6
Nucleus cuneatus
nTPM: 41.9
2564 Male, age 74, both hemispheres 54.7
2376 Male, age 61, both hemispheres 45.6
2380 Male, age 80, both hemispheres 45.2
2562 Male, age 61, both hemispheres 41.8
2131 Male, age 76, both hemispheres 40.5
2808 Female, age 85, both hemispheres 40.0
2100 Male, age 76, both hemispheres 38.0
2381 Male, age 80, both hemispheres 36.8
2805 Female, age 91, both hemispheres 34.2
Nucleus gracilis
nTPM: 44.1
2627 Male, age 74, both hemispheres 59.3
2382 Male, age 80, both hemispheres 37.1
2299 Female, age 85, both hemispheres 36.0
Nucleus raphe obscurus
nTPM: 48.7
2845 Female, age 85, midline 53.2
2142 Male, age 76, midline 48.1
2800 Male, age 61, midline 44.8
Nucleus raphe pallidus
nTPM: 58.5
1924 Male, age 61, midline 67.5
2183 Male, age 80, midline 57.3
2145 Male, age 76, midline 50.8
Nucleus tractus solitarii
nTPM: 52.3
2144 Female, age 91, right hemisphere 87.6
2656 Male, age 76, both hemispheres 47.5
2191 Female, age 85, both hemispheres 42.5
2307 Male, age 80, both hemispheres 31.7
Parvicellular reticular nuclei
nTPM: 48.6
2119 Male, age 80, both hemispheres 53.2
2095 Male, age 76, both hemispheres 53.1
2558 Male, age 74, both hemispheres 39.5
Parvicellular reticular nuclei, medullary
nTPM: 51.9
2189 Female, age 91, both hemispheres 55.9
2091 Female, age 85, both hemispheres 51.1
2181 Male, age 80, left hemisphere 48.5
Peritrigeminal nucleus
nTPM: 55.4
2179 Male, age 61, both hemispheres 58.1
2136 Male, age 76, both hemispheres 54.5
2067 Female, age 85, both hemispheres 53.5
Prepositus hypoglossal nucleus
nTPM: 57.3
2855 Female, age 85, right hemisphere 61.8
2086 Male, age 80, both hemispheres 52.8
Spinal trigeminal nucleus, caudal
nTPM: 46.7
2390 Female, age 91, both hemispheres 58.3
2447 Male, age 76, both hemispheres 48.0
2312 Male, age 61, both hemispheres 45.1
2642 Male, age 74, both hemispheres 43.2
2308 Male, age 80, both hemispheres 39.2
Spinal trigeminal nucleus, interpolar
nTPM: 57.0
2066 Male, age 76, right hemisphere 64.2
2625 Male, age 61, both hemispheres 63.2
2033 Male, age 80, both hemispheres 55.6
2386 Female, age 85, both hemispheres 52.7
2389 Female, age 91, both hemispheres 49.0
Spinal vestibular nucleus
nTPM: 53.6
2186 Female, age 91, both hemispheres 60.1
2806 Female, age 85, both hemispheres 58.8
2748 Male, age 76, both hemispheres 54.2
2780 Male, age 80, both hemispheres 53.9
2796 Male, age 61, both hemispheres 49.0
2384 Male, age 74, both hemispheres 45.5
Superior vestibular nucleus
nTPM: 61.8
2383 Male, age 74, both hemispheres 75.6
2015 Male, age 80, both hemispheres 57.0
2061 Male, age 76, both hemispheres 52.8
Ventral medullary reticular nucleus
nTPM: 46.6
2372 Male, age 61, both hemispheres 46.7
2060 Male, age 76, both hemispheres 46.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 51.2
2741 Female, age 85, both hemispheres 57.0
2302 Female, age 91, both hemispheres 53.4
1986 Male, age 76, both hemispheres 52.0
2180 Male, age 61, both hemispheres 49.6
2118 Male, age 80, both hemispheres 43.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 130.5
FF:10174-103C3 60 years, female 172.4
FF:10155-103A2 76 years, female 109.8
FF:10038-101F2 18-64 years, mixed 109.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 143.4
Samples: 4

Max nTPM: 152.8
Min nTPM: 136.1
Sample A Female 136.1
Sample B Female 144.0
Sample C Male 140.6
Sample D Male 152.8

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