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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.5 nTPM
HPA Brain:47.6 nTPM
GTEx:75.5 nTPM
FANTOM5:109.7 Scaled Tags Per Million
Pig:100.0 nTPM
Mouse:61.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.6
Sample id Sample description nTPM
Amygdala
nTPM: 47.6
2514 Male, age 75, right hemisphere 54.0
1987 Female, age 91, left hemisphere 51.4
2814 Male, age 76, right hemisphere 49.6
2695 Female, age 67, right hemisphere 43.6
2517 Female, age 94, left hemisphere 39.5
Basal amygdala
nTPM: 36.6
2609 Male, age 75, right hemisphere 44.7
2110 Male, age 80, left hemisphere 43.2
1955 Male, age 76, both hemispheres 42.0
2243 Female, age 91, right hemisphere 37.5
2685 Female, age 94, left hemisphere 30.7
2827 Female, age 67, right hemisphere 21.3
Central amygdala
nTPM: 42.3
2515 Male, age 75, right hemisphere 50.0
1905 Male, age 76, both hemispheres 48.2
2239 Male, age 80, left hemisphere 42.7
2701 Female, age 91, right hemisphere 37.4
2826 Female, age 94, left hemisphere 33.5
Corticomedial amygdala
nTPM: 42.2
2428 Male, age 75, right hemisphere 52.4
2429 Female, age 94, left hemisphere 46.9
2829 Male, age 80, left hemisphere 44.6
2240 Male, age 76, both hemispheres 43.0
2242 Female, age 91, right hemisphere 43.0
2535 Female, age 67, right hemisphere 23.6
Lateral amygdala
nTPM: 37.9
2516 Male, age 75, right hemisphere 49.5
1883 Male, age 76, both hemispheres 48.0
2534 Female, age 94, left hemisphere 35.9
2256 Male, age 80, left hemisphere 34.1
2255 Female, age 91, right hemisphere 33.9
2830 Female, age 67, right hemisphere 25.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.5
Samples: 152

Max nTPM: 174.3
Min nTPM: 42.9
Std nTPM: 19.5
Median nTPM: 71.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 174.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 136.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 131.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 126.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 124.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 121.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 114.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 113.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 111.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 110.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 106.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 99.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 99.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 98.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 97.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 94.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 91.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 91.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 90.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 89.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 87.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 86.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 85.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 85.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 84.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 83.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 83.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 83.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 83.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 81.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 80.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 79.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 79.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 79.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 78.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 78.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 78.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 77.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 77.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 76.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 76.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 76.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 76.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 76.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 76.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 75.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 75.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 75.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 74.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 73.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 73.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 73.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 71.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 71.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 70.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 70.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 69.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 68.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 68.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 67.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 67.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 67.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 66.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 66.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 66.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 66.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 66.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 65.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 64.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 63.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 63.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 63.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 62.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 61.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 59.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 58.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 58.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 58.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 56.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 54.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 54.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 54.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 53.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 52.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 49.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 48.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 47.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 47.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 46.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 44.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 42.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.7
FF:10151-102I7 76 years, female 109.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.0
Pig sample Sample description nTPM
Amygdala
nTPM: 100.0
Samples: 4

Max nTPM: 121.3
Min nTPM: 85.7
Sample A Female 121.3
Sample B Female 105.9
Sample C Male 85.7
Sample D Male 87.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 61.7
Samples: 4

Max nTPM: 63.6
Min nTPM: 58.6
Sample A Male 61.9
Sample B Male 58.6
Sample C Female 62.5
Sample D Female 63.6

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