MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA Brain:66.7 nTPM
GTEx:21.4 nTPM
FANTOM5:146.5 Scaled Tags Per Million
Pig:48.1 nTPM
Mouse:43.3 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.9
1870 Female, age 42, unknown 65.6
2411 Female, age 72, unknown 62.7
1833 Male, age 53, unknown 62.0
1830 Male, age 51, unknown 60.1
2019 Male, age 18, unknown 58.3
2219 Male, age 76, both hemispheres 56.3
1827 Male, age 72, unknown 55.8
2828 Female, age 72, unknown 55.1
2666 Male, age 74, left hemisphere 49.1
2586 Male, age 75, left hemisphere 43.5
Dorsal raphe nucleus
nTPM: 64.7
2298 Female, age 72, unknown 69.8
2750 Male, age 76, both hemispheres 66.2
2016 Female, age 72, unknown 64.8
2047 Male, age 72, unknown 64.2
1828 Male, age 53, unknown 58.6
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 60.2
1890 Male, age 53, unknown 55.8
1848 Female, age 42, unknown 55.5
2849 Male, age 72, unknown 51.0
Median raphe nucleus
nTPM: 66.7
2220 Male, age 76, midline 66.7
Periaquaductal grey, anterior
nTPM: 61.2
1947 Male, age 18, unknown 70.3
2502 Female, age 75, unknown 60.2
1795 Male, age 51, unknown 53.0
Periaquaductal grey, dorsal
nTPM: 57.5
2850 Male, age 76, both hemispheres 63.6
1840 Male, age 53, unknown 57.9
1831 Male, age 72, unknown 55.0
2464 Female, age 72, unknown 53.7
Periaquaductal grey, lateral
nTPM: 55.2
2272 Male, age 74, both hemispheres 57.2
2140 Male, age 76, both hemispheres 55.7
2053 Male, age 18, unknown 52.8
Pretectal area
nTPM: 58.0
2273 Male, age 74, both hemispheres 65.7
2667 Female, age 75, unknown 65.5
2224 Female, age 72, unknown 65.0
1815 Male, age 53, unknown 58.8
1817 Female, age 42, unknown 57.3
2316 Male, age 76, right hemisphere 57.3
2007 Male, age 72, unknown 55.4
2825 Male, age 18, unknown 55.4
1944 Female, age 72, unknown 53.8
2407 Male, age 75, both hemispheres 52.6
1816 Male, age 51, unknown 51.6
Red nucleus
nTPM: 57.4
1954 Female, age 42, unknown 66.5
1821 Female, age 72, unknown 65.8
2725 Female, age 75, unknown 63.0
2823 Male, age 76, right hemisphere 62.1
1865 Male, age 51, unknown 61.8
1904 Male, age 53, unknown 61.3
2503 Female, age 72, unknown 57.6
2227 Male, age 72, unknown 54.6
2769 Male, age 72, unknown 53.2
2785 Male, age 18, unknown 51.5
2584 Male, age 75, left hemisphere 47.1
2588 Male, age 74, left hemisphere 44.1
Substantia nigra
nTPM: 64.6
2241 Male, age 72, unknown 82.6
1916 Female, age 42, unknown 75.5
2699 Male, age 18, unknown 68.0
1851 Male, age 51, unknown 67.5
2409 Female, age 72, unknown 67.2
1941 Male, age 53, unknown 63.1
1889 Female, age 72, unknown 61.4
2583 Male, age 75, right hemisphere 54.6
2590 Female, age 75, unknown 53.8
2665 Male, age 74, both hemispheres 52.6
Superior colliculus
nTPM: 54.7
1913 Female, age 42, unknown 61.4
2587 Male, age 74, left hemisphere 60.8
1995 Male, age 72, unknown 56.9
1839 Male, age 51, unknown 56.2
2087 Female, age 72, unknown 55.4
1895 Male, age 76, right hemisphere 55.3
2668 Female, age 75, unknown 52.2
2261 Male, age 18, unknown 51.8
1796 Male, age 53, unknown 51.4
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 62.6
1915 Female, age 42, unknown 64.9
2410 Female, age 72, unknown 64.7
1942 Male, age 51, unknown 64.0
2218 Male, age 76, both hemispheres 63.6
2021 Male, age 53, unknown 61.0
2223 Female, age 72, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.4
Samples: 139

Max nTPM: 34.5
Min nTPM: 13.2
Std nTPM: 4.0
Median nTPM: 20.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 31.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 30.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 29.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 29.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 28.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 27.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 146.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.5
FF:10158-103A5 76 years, female 146.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 51.3
Min nTPM: 43.1
Sample A Female 50.9
Sample B Female 47.0
Sample C Male 51.3
Sample D Male 43.1
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 43.1
Sample A Female 55.3
Sample B Female 43.1
Sample C Male 49.4
Sample D Male 43.8
Periaqueductal gray
nTPM: 42.6
Samples: 3

Max nTPM: 47.3
Min nTPM: 39.5
Sample B Female 41.1
Sample C Male 47.3
Sample D Male 39.5
Superior colliculi
nTPM: 46.3
Samples: 4

Max nTPM: 49.6
Min nTPM: 43.7
Sample A Female 49.6
Sample B Female 48.1
Sample C Male 43.7
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.3
Samples: 4

Max nTPM: 46.1
Min nTPM: 41.2
Sample A Male 41.2
Sample B Male 46.1
Sample C Female 44.4
Sample D Female 41.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
2631 Antisense, RP_040420_01_G07, Mouse strain C57BL/6J (56 days, male) 4.0
2632 Antisense, RP_040420_01_G07, Mouse strain C57BL/6J (56 days, male) 3.0
71148070 Antisense, RP_050719_03_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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