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CXCL6
HPA
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  • CXCL6
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CXCL6
Synonyms CKA-3, GCP-2, SCYB6
Gene descriptioni

Full gene name according to HGNC.

C-X-C motif chemokine ligand 6
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 4
Cytoband q13.3
Chromosome location (bp) 73836640 - 73849064
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000124875 (version 109)
Entrez gene 6372
HGNC HGNC:10643
UniProt P80162 (UniProt - Evidence at protein level)
neXtProt NX_P80162
GeneCards CXCL6
Antibodypedia CXCL6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Chemotactic for neutrophil granulocytes. Signals through binding and activation of its receptors (CXCR1 and CXCR2). In addition to its chemotactic and angiogenic properties, it has strong antibacterial activity against Gram-positive and Gram-negative bacteria (90-fold-higher when compared to CXCL5 and CXCL7).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Antibiotic, Antimicrobial, Cytokine, Heparin-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Chemotaxis
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a member CXC chemokine family. The encoded protein is a chemotactic for neutrophil granulocytes and has antibacterial action against gram-negative and gram-positive bacteria. This gene and other members of the CXC chemokine gene family form a gene cluster in a region of chromosome 4q. [provided by RefSeq, Jun 2020]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CXCL6-201
ENSP00000226317
ENST00000226317
P80162
[Direct mapping] C-X-C motif chemokine 6 Small-inducible cytokine B6, N-processed variant 1 Small-inducible cytokine B6, N-processed variant 2 Small-inducible cytokine B6, N-processed variant 3
Show all
   MEMSAT3 predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001776 [leukocyte homeostasis]
GO:0005125 [cytokine activity]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0006935 [chemotaxis]
GO:0006952 [defense response]
GO:0006954 [inflammatory response]
GO:0006955 [immune response]
GO:0007165 [signal transduction]
GO:0007267 [cell-cell signaling]
GO:0008009 [chemokine activity]
GO:0008201 [heparin binding]
GO:0009605 [response to external stimulus]
GO:0030593 [neutrophil chemotaxis]
GO:0032496 [response to lipopolysaccharide]
GO:0032642 [regulation of chemokine production]
GO:0042119 [neutrophil activation]
GO:0042742 [defense response to bacterium]
GO:0045236 [CXCR chemokine receptor binding]
GO:0061844 [antimicrobial humoral immune response mediated by antimicrobial peptide]
GO:0070098 [chemokine-mediated signaling pathway]
GO:0070951 [regulation of neutrophil mediated killing of gram-negative bacterium]
GO:0071222 [cellular response to lipopolysaccharide]
Show all
114 aa
11.9 kDa
Yes 0
CXCL6-203
ENSP00000424819
ENST00000515050
D6RF92
[Direct mapping] C-X-C motif chemokine
Show all
   MEMSAT3 predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Show all
GO:0005125 [cytokine activity]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0006935 [chemotaxis]
GO:0006952 [defense response]
GO:0006955 [immune response]
GO:0007165 [signal transduction]
GO:0008009 [chemokine activity]
GO:0009605 [response to external stimulus]
GO:0060326 [cell chemotaxis]
Show all
113 aa
11.9 kDa
Yes 0

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