MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.7 nTPM
HPA Brain:62.3 nTPM
GTEx:51.7 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:213.3 nTPM
Mouse:204.9 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.1
2019 Male, age 18, unknown 76.4
2411 Female, age 72, unknown 73.5
1827 Male, age 72, unknown 55.6
2219 Male, age 76, both hemispheres 52.5
1870 Female, age 42, unknown 51.9
1833 Male, age 53, unknown 50.6
2666 Male, age 74, left hemisphere 48.4
1830 Male, age 51, unknown 45.0
2828 Female, age 72, unknown 42.3
2586 Male, age 75, left hemisphere 34.5
Dorsal raphe nucleus
nTPM: 58.6
2298 Female, age 72, unknown 71.7
1828 Male, age 53, unknown 64.3
2047 Male, age 72, unknown 59.5
2750 Male, age 76, both hemispheres 56.7
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 55.9
2097 Female, age 72, unknown 67.8
1890 Male, age 53, unknown 55.5
1848 Female, age 42, unknown 55.1
2849 Male, age 72, unknown 45.3
Median raphe nucleus
nTPM: 54.3
2220 Male, age 76, midline 54.3
Periaquaductal grey, anterior
nTPM: 51.1
1947 Male, age 18, unknown 54.4
2502 Female, age 75, unknown 50.8
1795 Male, age 51, unknown 48.0
Periaquaductal grey, dorsal
nTPM: 46.7
1831 Male, age 72, unknown 49.2
1840 Male, age 53, unknown 47.0
2464 Female, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 44.4
Periaquaductal grey, lateral
nTPM: 47.6
2272 Male, age 74, both hemispheres 61.9
2053 Male, age 18, unknown 40.5
2140 Male, age 76, both hemispheres 40.4
Pretectal area
nTPM: 62.3
2007 Male, age 72, unknown 81.6
1944 Female, age 72, unknown 80.0
1817 Female, age 42, unknown 79.1
1816 Male, age 51, unknown 78.6
1815 Male, age 53, unknown 63.4
2667 Female, age 75, unknown 61.8
2273 Male, age 74, both hemispheres 60.1
2224 Female, age 72, unknown 55.5
2316 Male, age 76, right hemisphere 44.9
2825 Male, age 18, unknown 41.7
2407 Male, age 75, both hemispheres 38.6
Red nucleus
nTPM: 51.5
1821 Female, age 72, unknown 69.8
2725 Female, age 75, unknown 63.6
2785 Male, age 18, unknown 63.0
1954 Female, age 42, unknown 52.4
1865 Male, age 51, unknown 49.7
2823 Male, age 76, right hemisphere 49.1
1904 Male, age 53, unknown 47.6
2503 Female, age 72, unknown 47.1
2769 Male, age 72, unknown 46.4
2227 Male, age 72, unknown 45.6
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 41.3
Substantia nigra
nTPM: 59.8
1889 Female, age 72, unknown 79.5
1916 Female, age 42, unknown 78.1
1941 Male, age 53, unknown 70.6
1851 Male, age 51, unknown 65.7
2241 Male, age 72, unknown 61.0
2409 Female, age 72, unknown 60.0
2590 Female, age 75, unknown 49.8
2699 Male, age 18, unknown 46.2
2665 Male, age 74, both hemispheres 44.9
2583 Male, age 75, right hemisphere 42.0
Superior colliculus
nTPM: 51.0
2087 Female, age 72, unknown 65.3
1895 Male, age 76, right hemisphere 62.7
2587 Male, age 74, left hemisphere 59.5
2261 Male, age 18, unknown 53.9
1796 Male, age 53, unknown 51.5
1839 Male, age 51, unknown 49.5
1913 Female, age 42, unknown 46.8
2668 Female, age 75, unknown 45.9
1995 Male, age 72, unknown 45.1
2664 Male, age 75, both hemispheres 30.0
Ventral tegmental area
nTPM: 56.8
2410 Female, age 72, unknown 77.7
2218 Male, age 76, both hemispheres 63.1
1915 Female, age 42, unknown 62.0
2223 Female, age 72, unknown 49.1
1942 Male, age 51, unknown 47.9
2021 Male, age 53, unknown 41.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 139

Max nTPM: 147.7
Min nTPM: 26.7
Std nTPM: 19.7
Median nTPM: 46.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 147.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 102.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 93.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 93.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 88.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 86.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 85.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 84.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 83.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 213.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.8
Samples: 4

Max nTPM: 173.3
Min nTPM: 100.7
Sample A Female 173.3
Sample B Female 114.7
Sample C Male 150.4
Sample D Male 100.7
Midbrain
nTPM: 167.9
Samples: 4

Max nTPM: 240.0
Min nTPM: 120.0
Sample A Female 149.1
Sample B Female 120.0
Sample C Male 240.0
Sample D Male 162.3
Periaqueductal gray
nTPM: 113.2
Samples: 3

Max nTPM: 119.3
Min nTPM: 101.9
Sample B Female 119.3
Sample C Male 118.5
Sample D Male 101.9
Superior colliculi
nTPM: 213.3
Samples: 4

Max nTPM: 254.1
Min nTPM: 172.3
Sample A Female 182.5
Sample B Female 244.2
Sample C Male 254.1
Sample D Male 172.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 204.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 204.9
Samples: 4

Max nTPM: 209.7
Min nTPM: 199.7
Sample A Male 199.7
Sample B Male 204.1
Sample C Female 209.7
Sample D Female 206.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
76115728 Antisense, RP_060620_02_B07, Mouse strain C57BL/6J (56 days, male) 15.5
69734500 Antisense, RP_050503_01_A09, Mouse strain C57BL/6J (56 days, male) 13.2

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