MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:11.4 nTPM
GTEx:10.6 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Mouse:12.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.9
2411 Female, age 72, unknown 9.2
1870 Female, age 42, unknown 9.1
1827 Male, age 72, unknown 8.5
2219 Male, age 76, both hemispheres 8.3
1833 Male, age 53, unknown 8.2
1830 Male, age 51, unknown 7.9
2019 Male, age 18, unknown 7.4
2666 Male, age 74, left hemisphere 6.9
2828 Female, age 72, unknown 6.9
2586 Male, age 75, left hemisphere 6.4
Dorsal raphe nucleus
nTPM: 8.6
2298 Female, age 72, unknown 9.8
2047 Male, age 72, unknown 9.3
2750 Male, age 76, both hemispheres 9.1
1828 Male, age 53, unknown 7.9
2016 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 8.9
1848 Female, age 42, unknown 9.5
2097 Female, age 72, unknown 9.4
2849 Male, age 72, unknown 9.1
1890 Male, age 53, unknown 7.7
Median raphe nucleus
nTPM: 11.4
2220 Male, age 76, midline 11.4
Periaquaductal grey, anterior
nTPM: 9.5
2502 Female, age 75, unknown 11.9
1947 Male, age 18, unknown 8.5
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 7.7
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 7.5
2464 Female, age 72, unknown 7.2
1831 Male, age 72, unknown 7.1
Periaquaductal grey, lateral
nTPM: 7.1
2053 Male, age 18, unknown 7.2
2140 Male, age 76, both hemispheres 7.1
2272 Male, age 74, both hemispheres 7.0
Pretectal area
nTPM: 8.2
1816 Male, age 51, unknown 9.6
1944 Female, age 72, unknown 9.0
2007 Male, age 72, unknown 8.8
1817 Female, age 42, unknown 8.7
2825 Male, age 18, unknown 8.7
2273 Male, age 74, both hemispheres 8.6
2224 Female, age 72, unknown 8.5
2316 Male, age 76, right hemisphere 8.0
1815 Male, age 53, unknown 7.3
2667 Female, age 75, unknown 7.2
2407 Male, age 75, both hemispheres 6.1
Red nucleus
nTPM: 7.9
1821 Female, age 72, unknown 9.7
1954 Female, age 42, unknown 8.3
2227 Male, age 72, unknown 8.3
2769 Male, age 72, unknown 8.2
2725 Female, age 75, unknown 7.9
2503 Female, age 72, unknown 7.7
2785 Male, age 18, unknown 7.7
1865 Male, age 51, unknown 7.6
1904 Male, age 53, unknown 7.5
2588 Male, age 74, left hemisphere 7.3
2584 Male, age 75, left hemisphere 7.2
2823 Male, age 76, right hemisphere 7.1
Substantia nigra
nTPM: 8.6
1941 Male, age 53, unknown 10.8
1916 Female, age 42, unknown 10.7
2409 Female, age 72, unknown 10.1
2241 Male, age 72, unknown 9.3
1851 Male, age 51, unknown 8.6
2665 Male, age 74, both hemispheres 8.4
1889 Female, age 72, unknown 8.0
2699 Male, age 18, unknown 7.9
2590 Female, age 75, unknown 6.6
2583 Male, age 75, right hemisphere 5.8
Superior colliculus
nTPM: 7.6
2261 Male, age 18, unknown 8.8
1895 Male, age 76, right hemisphere 8.5
2668 Female, age 75, unknown 8.4
1796 Male, age 53, unknown 7.9
2087 Female, age 72, unknown 7.7
1839 Male, age 51, unknown 7.6
1913 Female, age 42, unknown 7.5
2587 Male, age 74, left hemisphere 7.5
2664 Male, age 75, both hemispheres 6.7
1995 Male, age 72, unknown 5.1
Ventral tegmental area
nTPM: 8.5
2410 Female, age 72, unknown 9.6
1915 Female, age 42, unknown 8.9
1942 Male, age 51, unknown 8.4
2218 Male, age 76, both hemispheres 8.4
2223 Female, age 72, unknown 8.0
2021 Male, age 53, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 23.0
Min nTPM: 5.9
Std nTPM: 2.4
Median nTPM: 10.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 18.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 15.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 14.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 14.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 14.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 14.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.1
Sample A Male 14.7
Sample B Male 12.1
Sample C Female 12.1
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69202394 Antisense, RP_050324_03_F02, Mouse strain C57BL/6J (56 days, male) 3.2

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