MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:32.1 nTPM
GTEx:9.7 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:17.5 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.9
2586 Male, age 75, left hemisphere 34.8
2219 Male, age 76, both hemispheres 34.2
2666 Male, age 74, left hemisphere 32.1
1833 Male, age 53, unknown 31.6
1830 Male, age 51, unknown 31.1
1827 Male, age 72, unknown 30.0
2828 Female, age 72, unknown 30.0
1870 Female, age 42, unknown 28.9
2019 Male, age 18, unknown 28.5
2411 Female, age 72, unknown 27.4
Dorsal raphe nucleus
nTPM: 29.0
2047 Male, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 30.3
1828 Male, age 53, unknown 29.1
2016 Female, age 72, unknown 28.4
2298 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 29.8
2849 Male, age 72, unknown 33.9
1848 Female, age 42, unknown 29.8
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 25.9
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 31.4
1795 Male, age 51, unknown 29.5
2502 Female, age 75, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 29.4
2850 Male, age 76, both hemispheres 33.4
1840 Male, age 53, unknown 28.2
2464 Female, age 72, unknown 28.1
1831 Male, age 72, unknown 27.9
Periaquaductal grey, lateral
nTPM: 31.9
2140 Male, age 76, both hemispheres 35.8
2272 Male, age 74, both hemispheres 31.2
2053 Male, age 18, unknown 28.6
Pretectal area
nTPM: 29.8
2316 Male, age 76, right hemisphere 32.0
1944 Female, age 72, unknown 31.3
2407 Male, age 75, both hemispheres 31.2
1816 Male, age 51, unknown 30.7
2825 Male, age 18, unknown 30.3
2007 Male, age 72, unknown 29.7
2667 Female, age 75, unknown 29.2
1817 Female, age 42, unknown 29.1
1815 Male, age 53, unknown 28.7
2224 Female, age 72, unknown 28.0
2273 Male, age 74, both hemispheres 27.7
Red nucleus
nTPM: 29.7
2588 Male, age 74, left hemisphere 33.8
2823 Male, age 76, right hemisphere 32.3
2584 Male, age 75, left hemisphere 31.9
2785 Male, age 18, unknown 30.7
2227 Male, age 72, unknown 30.1
2769 Male, age 72, unknown 30.0
2725 Female, age 75, unknown 29.4
1904 Male, age 53, unknown 29.0
1865 Male, age 51, unknown 28.7
2503 Female, age 72, unknown 28.6
1954 Female, age 42, unknown 26.7
1821 Female, age 72, unknown 25.2
Substantia nigra
nTPM: 29.5
1941 Male, age 53, unknown 31.7
2699 Male, age 18, unknown 31.5
2590 Female, age 75, unknown 31.3
2665 Male, age 74, both hemispheres 30.9
1916 Female, age 42, unknown 29.6
2583 Male, age 75, right hemisphere 29.6
1889 Female, age 72, unknown 28.7
1851 Male, age 51, unknown 27.7
2241 Male, age 72, unknown 27.5
2409 Female, age 72, unknown 26.8
Superior colliculus
nTPM: 29.9
2664 Male, age 75, both hemispheres 32.2
1913 Female, age 42, unknown 31.3
1839 Male, age 51, unknown 30.8
2087 Female, age 72, unknown 30.6
2261 Male, age 18, unknown 30.3
1895 Male, age 76, right hemisphere 30.0
2668 Female, age 75, unknown 29.8
1796 Male, age 53, unknown 29.0
1995 Male, age 72, unknown 27.9
2587 Male, age 74, left hemisphere 27.6
Ventral tegmental area
nTPM: 29.5
1942 Male, age 51, unknown 30.8
2218 Male, age 76, both hemispheres 30.7
2021 Male, age 53, unknown 30.2
2223 Female, age 72, unknown 29.7
1915 Female, age 42, unknown 28.0
2410 Female, age 72, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 14.1
Min nTPM: 4.3
Std nTPM: 1.4
Median nTPM: 9.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 12.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 12.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 12.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.2
Sample A Female 12.6
Sample B Female 12.2
Sample C Male 14.2
Sample D Male 13.9
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.7
Sample A Female 15.8
Sample B Female 11.7
Sample C Male 13.1
Sample D Male 13.5
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 13.2
Min nTPM: 11.8
Sample B Female 11.8
Sample C Male 13.2
Sample D Male 12.9
Superior colliculi
nTPM: 12.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.6
Sample A Female 12.3
Sample B Female 11.6
Sample C Male 12.5
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.0
Sample A Male 15.0
Sample B Male 17.8
Sample C Female 18.3
Sample D Female 18.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69529077 Antisense, RP_050421_03_D11, Mouse strain C57BL/6J (56 days, male) 3.4

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