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GGA3
HPA
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  • GGA3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GGA3
Synonyms KIAA0154
Gene descriptioni

Full gene name according to HGNC.

Golgi associated, gamma adaptin ear containing, ARF binding protein 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q25.1
Chromosome location (bp) 75236599 - 75262363
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000125447 (version 109)
Entrez gene 23163
HGNC HGNC:17079
UniProt Q9NZ52 (UniProt - Evidence at protein level)
neXtProt NX_Q9NZ52
GeneCards GGA3
Antibodypedia GGA3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in protein sorting and trafficking between the trans-Golgi network (TGN) and endosomes. Mediates the ARF-dependent recruitment of clathrin to the TGN and binds ubiquitinated proteins and membrane cargo molecules with a cytosolic acidic cluster-dileucine (DXXLL) motif 1. Mediates export of the GPCR receptor ADRA2B to the cell surface 2. nvolved in BACE1 transport and sorting as well as regulation of BACE1 protein levels 3, 4, 5. Regulates retrograde transport of BACE1 from endosomes to the trans-Golgi network via interaction through the VHS motif and dependent of BACE1 phosphorylation 6. Modulates BACE1 protein levels independently of the interaction between VHS domain and DXXLL motif through recognition of ubiquitination 7. Key player in a novel DXXLL-mediated endosomal sorting machinery to the recycling pathway that targets NTRK1 to the plasma membrane (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Protein transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the Golgi-localized, gamma adaptin ear-containing, ARF-binding (GGA) family. This family includes ubiquitous coat proteins that regulate the trafficking of proteins between the trans-Golgi network and the lysosome. These proteins share an amino-terminal VHS domain which mediates sorting of the mannose 6-phosphate receptors at the trans-Golgi network. They also contain a carboxy-terminal region with homology to the ear domain of gamma-adaptins. Multiple alternatively spliced transcript variants have been identified in this gene. [provided by RefSeq, Feb 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GGA3-201
ENSP00000438085
ENST00000537686
Q9NZ52
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0006622 [protein targeting to lysosome]
GO:0006886 [intracellular protein transport]
GO:0006893 [Golgi to plasma membrane transport]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030163 [protein catabolic process]
GO:0031267 [small GTPase binding]
GO:0031647 [regulation of protein stability]
GO:0031648 [protein destabilization]
GO:0031901 [early endosome membrane]
GO:0032456 [endocytic recycling]
GO:0032991 [protein-containing complex]
GO:0034394 [protein localization to cell surface]
GO:0035091 [phosphatidylinositol binding]
GO:0043001 [Golgi to plasma membrane protein transport]
GO:0043130 [ubiquitin binding]
GO:0044877 [protein-containing complex binding]
GO:0045732 [positive regulation of protein catabolic process]
GO:0051641 [cellular localization]
GO:0055037 [recycling endosome]
GO:0055038 [recycling endosome membrane]
GO:0061462 [protein localization to lysosome]
GO:1902430 [negative regulation of amyloid-beta formation]
Show all
723 aa
78.3 kDa
No 0
GGA3-202
ENSP00000446421
ENST00000538886
Q9NZ52
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0006622 [protein targeting to lysosome]
GO:0006886 [intracellular protein transport]
GO:0006893 [Golgi to plasma membrane transport]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031647 [regulation of protein stability]
GO:0031648 [protein destabilization]
GO:0031901 [early endosome membrane]
GO:0032991 [protein-containing complex]
GO:0034394 [protein localization to cell surface]
GO:0035091 [phosphatidylinositol binding]
GO:0043001 [Golgi to plasma membrane protein transport]
GO:0043130 [ubiquitin binding]
GO:0044877 [protein-containing complex binding]
GO:0051641 [cellular localization]
GO:0055038 [recycling endosome membrane]
GO:1902430 [negative regulation of amyloid-beta formation]
Show all
690 aa
74.5 kDa
No 0
GGA3-205
ENSP00000463288
ENST00000578348
Q9NZ52
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0006622 [protein targeting to lysosome]
GO:0006886 [intracellular protein transport]
GO:0006893 [Golgi to plasma membrane transport]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031647 [regulation of protein stability]
GO:0031648 [protein destabilization]
GO:0031901 [early endosome membrane]
GO:0032991 [protein-containing complex]
GO:0034394 [protein localization to cell surface]
GO:0035091 [phosphatidylinositol binding]
GO:0043001 [Golgi to plasma membrane protein transport]
GO:0043130 [ubiquitin binding]
GO:0044877 [protein-containing complex binding]
GO:0051641 [cellular localization]
GO:0055038 [recycling endosome membrane]
GO:1902430 [negative regulation of amyloid-beta formation]
Show all
592 aa
62.9 kDa
No 0
GGA3-208
ENSP00000481953
ENST00000579743
A0A087WYN2
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005802 [trans-Golgi network]
GO:0006886 [intracellular protein transport]
GO:0031267 [small GTPase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0043130 [ubiquitin binding]
Show all
46 aa
5.4 kDa
No 0
GGA3-210
ENSP00000462473
ENST00000580799
J3KSG3
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005802 [trans-Golgi network]
GO:0006886 [intracellular protein transport]
GO:0031267 [small GTPase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0043130 [ubiquitin binding]
Show all
136 aa
15.7 kDa
No 0
GGA3-213
ENSP00000462629
ENST00000582486
J3KSS7
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0006886 [intracellular protein transport]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031901 [early endosome membrane]
GO:0035091 [phosphatidylinositol binding]
GO:0043130 [ubiquitin binding]
GO:0051641 [cellular localization]
Show all
632 aa
67.9 kDa
No 0
GGA3-214
ENSP00000462081
ENST00000582717
Q9NZ52
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005764 [lysosome]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005802 [trans-Golgi network]
GO:0006622 [protein targeting to lysosome]
GO:0006886 [intracellular protein transport]
GO:0006893 [Golgi to plasma membrane transport]
GO:0010008 [endosome membrane]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031647 [regulation of protein stability]
GO:0031648 [protein destabilization]
GO:0031901 [early endosome membrane]
GO:0032991 [protein-containing complex]
GO:0034394 [protein localization to cell surface]
GO:0035091 [phosphatidylinositol binding]
GO:0043001 [Golgi to plasma membrane protein transport]
GO:0043130 [ubiquitin binding]
GO:0044877 [protein-containing complex binding]
GO:0051641 [cellular localization]
GO:0055038 [recycling endosome membrane]
GO:1902430 [negative regulation of amyloid-beta formation]
Show all
651 aa
70.1 kDa
No 0
GGA3-216
ENSP00000463115
ENST00000583282
J3KTR5
[Direct mapping] ADP-ribosylation factor-binding protein GGA3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005802 [trans-Golgi network]
GO:0006886 [intracellular protein transport]
GO:0015031 [protein transport]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
Show all
110 aa
11.8 kDa
No 0

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