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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:115.0 nTPM
HPA Brain:113.2 nTPM
GTEx:115.0 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:38.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.2
Sample id Sample description nTPM
Amygdala
nTPM: 91.4
2814 Male, age 76, right hemisphere 112.8
2517 Female, age 94, left hemisphere 93.6
2695 Female, age 67, right hemisphere 91.1
1987 Female, age 91, left hemisphere 83.6
2514 Male, age 75, right hemisphere 76.1
Basal amygdala
nTPM: 113.1
2827 Female, age 67, right hemisphere 143.2
2685 Female, age 94, left hemisphere 125.1
2243 Female, age 91, right hemisphere 110.4
1955 Male, age 76, both hemispheres 104.3
2609 Male, age 75, right hemisphere 101.9
2110 Male, age 80, left hemisphere 93.7
Central amygdala
nTPM: 110.2
2826 Female, age 94, left hemisphere 155.8
1905 Male, age 76, both hemispheres 104.3
2239 Male, age 80, left hemisphere 101.9
2515 Male, age 75, right hemisphere 95.7
2701 Female, age 91, right hemisphere 93.4
Corticomedial amygdala
nTPM: 101.2
2535 Female, age 67, right hemisphere 139.6
2829 Male, age 80, left hemisphere 105.3
2242 Female, age 91, right hemisphere 96.9
2429 Female, age 94, left hemisphere 95.1
2428 Male, age 75, right hemisphere 90.5
2240 Male, age 76, both hemispheres 79.9
Lateral amygdala
nTPM: 113.2
2534 Female, age 94, left hemisphere 138.1
2830 Female, age 67, right hemisphere 121.2
2256 Male, age 80, left hemisphere 113.3
2255 Female, age 91, right hemisphere 111.1
1883 Male, age 76, both hemispheres 105.7
2516 Male, age 75, right hemisphere 90.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.0
Samples: 152

Max nTPM: 218.7
Min nTPM: 51.5
Std nTPM: 28.3
Median nTPM: 114.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 218.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 195.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 174.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 169.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 163.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 161.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 158.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 153.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 152.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 151.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 151.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 149.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 149.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 149.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 149.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 148.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 148.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 145.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 145.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 143.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 140.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 140.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 136.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 136.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 136.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 131.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 129.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 129.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 128.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 128.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 127.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 127.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 127.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 127.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 126.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 126.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 125.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 125.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 124.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 122.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 120.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 119.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 119.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 119.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 118.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 117.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 117.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 117.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 117.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 114.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 114.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 113.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 112.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 111.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 111.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 110.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 109.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 109.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 108.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 108.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 107.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 107.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 106.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 106.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 104.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 102.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 100.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 100.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 98.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 96.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 96.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 96.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 95.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 94.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 93.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 93.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 93.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 90.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 90.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 90.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 89.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 88.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 87.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 87.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 85.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 84.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 77.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 76.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 75.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 74.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 73.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 65.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 64.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 58.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 51.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 17.6
FF:10151-102I7 76 years, female 17.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.6
Pig sample Sample description nTPM
Amygdala
nTPM: 16.6
Samples: 4

Max nTPM: 19.7
Min nTPM: 13.7
Sample A Female 19.7
Sample B Female 13.7
Sample C Male 16.7
Sample D Male 16.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 38.9
Samples: 4

Max nTPM: 46.2
Min nTPM: 35.0
Sample A Male 35.0
Sample B Male 38.2
Sample C Female 46.2
Sample D Female 36.0

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