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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:458.4 nTPM
HPA Brain:307.2 nTPM
GTEx:458.4 nTPM
FANTOM5:764.9 Scaled Tags Per Million
Pig:405.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

307.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 301.3
2565 Male, age 75, midline 355.2
1981 Female, age 72, midline 335.3
2194 Female, age 79, both hemispheres 302.7
2816 Male, age 47, midline 300.7
2048 Male, age 55, midline 212.7
Cervical spinal cord, dorsal horn
nTPM: 270.5
2296 Male, age 66, both hemispheres 376.9
2173 Female, age 72, unknown 365.9
2069 Male, age 47, both hemispheres 245.4
2297 Male, age 75, both hemispheres 217.6
2721 Male, age 90, both hemispheres 215.5
1877 Male, age 55, unknown 201.9
Cervical spinal cord, ventral horn
nTPM: 307.2
2480 Male, age 75, both hemispheres 364.2
2098 Female, age 72, unknown 345.5
2809 Male, age 90, both hemispheres 309.2
2295 Male, age 66, both hemispheres 303.6
2820 Female, age 79, both hemispheres 261.8
2068 Male, age 55, unknown 259.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 458.4
Samples: 159

Max nTPM: 1330.6
Min nTPM: 148.3
Std nTPM: 173.1
Median nTPM: 444.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1330.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 821.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 819.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 802.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 794.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 786.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 775.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 768.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 763.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 745.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 734.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 719.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 715.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 701.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 701.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 681.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 669.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 664.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 662.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 660.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 651.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 646.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 642.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 632.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 632.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 618.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 616.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 609.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 606.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 604.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 601.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 597.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 596.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 590.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 590.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 585.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 575.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 575.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 570.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 566.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 565.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 560.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 553.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 551.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 548.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 539.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 538.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 538.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 538.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 526.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 525.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 524.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 521.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 515.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 513.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 503.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 502.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 500.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 497.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 495.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 489.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 487.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 481.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 476.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 475.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 475.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 473.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 467.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 464.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 463.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 461.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 461.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 460.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 456.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 452.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 451.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 448.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 446.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 445.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 444.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 442.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 439.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 437.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 434.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 434.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 425.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 423.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 421.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 418.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 416.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 416.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 414.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 410.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 409.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 407.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 406.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 402.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 392.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 387.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 384.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 381.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 381.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 378.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 376.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 374.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 373.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 371.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 366.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 362.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 361.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 360.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 357.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 357.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 356.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 351.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 349.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 346.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 345.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 341.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 337.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 337.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 335.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 334.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 333.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 330.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 329.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 329.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 325.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 323.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 312.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 304.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 294.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 294.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 293.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 293.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 288.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 272.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 265.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 260.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 247.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 246.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 242.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 239.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 238.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 238.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 234.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 233.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 227.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 222.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 215.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 214.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 211.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 188.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 187.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 174.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 172.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 163.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 150.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 148.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

764.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 764.9
FF:10181-103D1 60 years, female 1048.8
FF:10159-103A6 76 years, female 480.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

405.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 370.2
Samples: 4

Max nTPM: 538.4
Min nTPM: 260.1
Sample A Female 260.1
Sample B Female 374.7
Sample C Male 538.4
Sample D Male 307.7
Ventral spinal cord
nTPM: 405.6
Samples: 4

Max nTPM: 449.9
Min nTPM: 378.1
Sample A Female 378.1
Sample B Female 378.8
Sample C Male 449.9
Sample D Male 415.7

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