We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC25A23
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SLC25A23
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:287.0 nTPM
HPA Brain:240.6 nTPM
GTEx:287.0 nTPM
FANTOM5:239.9 Scaled Tags Per Million
Pig:120.6 nTPM
Mouse:303.7 nTPM
Allen mouse:13.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.6
Sample id Sample description nTPM
Amygdala
nTPM: 155.3
2517 Female, age 94, left hemisphere 186.5
2514 Male, age 75, right hemisphere 165.8
2695 Female, age 67, right hemisphere 154.0
1987 Female, age 91, left hemisphere 147.0
2814 Male, age 76, right hemisphere 123.0
Basal amygdala
nTPM: 240.6
2827 Female, age 67, right hemisphere 275.3
2685 Female, age 94, left hemisphere 268.7
2110 Male, age 80, left hemisphere 239.6
2243 Female, age 91, right hemisphere 233.9
2609 Male, age 75, right hemisphere 229.4
1955 Male, age 76, both hemispheres 196.6
Central amygdala
nTPM: 189.5
2826 Female, age 94, left hemisphere 289.3
2239 Male, age 80, left hemisphere 216.5
2515 Male, age 75, right hemisphere 182.2
2701 Female, age 91, right hemisphere 150.9
1905 Male, age 76, both hemispheres 108.5
Corticomedial amygdala
nTPM: 210.0
2829 Male, age 80, left hemisphere 257.0
2535 Female, age 67, right hemisphere 249.0
2428 Male, age 75, right hemisphere 192.5
2429 Female, age 94, left hemisphere 190.6
2242 Female, age 91, right hemisphere 189.8
2240 Male, age 76, both hemispheres 181.0
Lateral amygdala
nTPM: 206.9
2534 Female, age 94, left hemisphere 302.3
2256 Male, age 80, left hemisphere 253.5
2830 Female, age 67, right hemisphere 208.8
2516 Male, age 75, right hemisphere 180.4
2255 Female, age 91, right hemisphere 172.8
1883 Male, age 76, both hemispheres 123.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 287.0
Samples: 152

Max nTPM: 684.3
Min nTPM: 14.4
Std nTPM: 122.6
Median nTPM: 270.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 684.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 655.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 610.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 582.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 574.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 559.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 523.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 522.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 519.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 508.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 507.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 497.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 487.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 486.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 480.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 474.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 471.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 462.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 456.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 443.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 435.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 431.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 416.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 404.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 397.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 394.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 394.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 388.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 385.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 382.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 371.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 366.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 363.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 362.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 358.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 354.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 346.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 346.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 335.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 335.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 332.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 330.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 327.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 324.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 323.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 322.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 316.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 314.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 314.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 313.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 313.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 312.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 311.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 311.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 307.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 305.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 304.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 302.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 302.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 302.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 301.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 301.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 296.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 292.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 291.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 288.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 287.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 286.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 286.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 284.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 283.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 282.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 280.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 279.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 277.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 264.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 262.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 261.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 259.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 256.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 255.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 254.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 253.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 252.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 252.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 250.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 247.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 245.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 245.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 243.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 243.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 239.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 237.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 237.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 237.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 233.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 232.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 232.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 232.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 230.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 229.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 228.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 227.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 223.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 214.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 210.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 207.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 206.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 199.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 197.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 194.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 192.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 188.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 185.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 184.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 181.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 179.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 179.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 178.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 177.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 175.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 174.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 173.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 172.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 172.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 171.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 169.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 169.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 169.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 168.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 164.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 155.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 152.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 148.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 147.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 145.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 145.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 134.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 131.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 130.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 125.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 119.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 116.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 115.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 239.9
FF:10151-102I7 76 years, female 239.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.6
Pig sample Sample description nTPM
Amygdala
nTPM: 120.6
Samples: 4

Max nTPM: 138.2
Min nTPM: 106.4
Sample A Female 138.2
Sample B Female 106.4
Sample C Male 129.9
Sample D Male 107.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 303.7
Samples: 4

Max nTPM: 343.9
Min nTPM: 254.7
Sample A Male 254.7
Sample B Male 314.4
Sample C Female 343.9
Sample D Female 301.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.9
71280844 Antisense, RP_050818_01_G01, Mouse strain C57BL/6J (56 days, male) 13.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org