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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:64.8 nTPM
HPA Brain:57.4 nTPM
GTEx:64.8 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:21.2 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.4
Sample id Sample description nTPM
Amygdala
nTPM: 57.4
2814 Male, age 76, right hemisphere 62.0
1987 Female, age 91, left hemisphere 58.7
2514 Male, age 75, right hemisphere 57.9
2695 Female, age 67, right hemisphere 54.4
2517 Female, age 94, left hemisphere 54.2
Basal amygdala
nTPM: 45.0
2609 Male, age 75, right hemisphere 57.6
2110 Male, age 80, left hemisphere 45.5
1955 Male, age 76, both hemispheres 44.9
2685 Female, age 94, left hemisphere 43.3
2827 Female, age 67, right hemisphere 40.9
2243 Female, age 91, right hemisphere 38.0
Central amygdala
nTPM: 55.8
2826 Female, age 94, left hemisphere 68.4
2515 Male, age 75, right hemisphere 65.7
1905 Male, age 76, both hemispheres 62.0
2239 Male, age 80, left hemisphere 41.5
2701 Female, age 91, right hemisphere 41.4
Corticomedial amygdala
nTPM: 42.7
2428 Male, age 75, right hemisphere 57.1
2242 Female, age 91, right hemisphere 45.7
2829 Male, age 80, left hemisphere 43.5
2535 Female, age 67, right hemisphere 41.3
2429 Female, age 94, left hemisphere 39.1
2240 Male, age 76, both hemispheres 29.7
Lateral amygdala
nTPM: 52.7
2516 Male, age 75, right hemisphere 59.8
2534 Female, age 94, left hemisphere 57.1
2830 Female, age 67, right hemisphere 54.2
1883 Male, age 76, both hemispheres 53.8
2255 Female, age 91, right hemisphere 50.3
2256 Male, age 80, left hemisphere 40.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 64.8
Samples: 152

Max nTPM: 183.7
Min nTPM: 24.6
Std nTPM: 23.6
Median nTPM: 59.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 183.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 160.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 146.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 139.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 130.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 129.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 123.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 105.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 103.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 95.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 93.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 90.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 88.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 88.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 88.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 84.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 81.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 81.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 79.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 79.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 78.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 78.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 77.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 76.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 75.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 71.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 71.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 71.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 70.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 70.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 70.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 69.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 67.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 67.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 67.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 66.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 66.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 66.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 66.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 65.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 65.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 65.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 65.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 64.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 64.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 63.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 62.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 62.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 62.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 62.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 61.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 60.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 60.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 60.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 59.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 59.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 59.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 59.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 58.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 58.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 58.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 58.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 58.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 58.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 58.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 58.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 58.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 57.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 57.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 56.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 56.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 55.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 55.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 55.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 54.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 54.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 53.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 52.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 51.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 50.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 50.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 49.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 49.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 49.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 49.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 49.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 48.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 47.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 47.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 47.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 47.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 47.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 46.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 46.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 46.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 46.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 46.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 45.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 45.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 45.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 44.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 43.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 43.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 42.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 41.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 40.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 40.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 38.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 34.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 32.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 29.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.6
FF:10151-102I7 76 years, female 27.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.2
Pig sample Sample description nTPM
Amygdala
nTPM: 5.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.6
Sample A Female 6.6
Sample B Female 4.8
Sample C Male 4.6
Sample D Male 4.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 21.3
Samples: 4

Max nTPM: 24.5
Min nTPM: 18.0
Sample A Male 24.5
Sample B Male 18.0
Sample C Female 22.6
Sample D Female 19.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
68441580 Antisense, RP_041214_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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