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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:164.8 nTPM
HPA Brain:121.9 nTPM
GTEx:164.8 nTPM
FANTOM5:72.4 Scaled Tags Per Million
Pig:172.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 117.6
2565 Male, age 75, midline 156.9
1981 Female, age 72, midline 141.2
2194 Female, age 79, both hemispheres 99.5
2816 Male, age 47, midline 98.5
2048 Male, age 55, midline 92.0
Cervical spinal cord, dorsal horn
nTPM: 121.9
2173 Female, age 72, unknown 141.2
2069 Male, age 47, both hemispheres 135.9
2296 Male, age 66, both hemispheres 133.6
1877 Male, age 55, unknown 117.5
2297 Male, age 75, both hemispheres 104.9
2721 Male, age 90, both hemispheres 98.5
Cervical spinal cord, ventral horn
nTPM: 116.3
2480 Male, age 75, both hemispheres 141.1
2098 Female, age 72, unknown 133.0
2809 Male, age 90, both hemispheres 131.8
2068 Male, age 55, unknown 111.3
2295 Male, age 66, both hemispheres 99.1
2820 Female, age 79, both hemispheres 81.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.8
Samples: 159

Max nTPM: 289.6
Min nTPM: 86.2
Std nTPM: 36.7
Median nTPM: 160.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 289.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 285.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 268.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 262.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 248.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 241.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 237.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 232.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 231.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 231.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 229.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 224.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 222.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 214.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 212.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 209.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 209.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 200.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 197.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 196.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 196.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 196.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 195.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 195.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 194.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 194.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 194.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 193.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 192.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 191.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 191.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 190.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 189.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 189.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 189.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 189.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 186.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 185.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 185.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 184.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 184.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 183.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 180.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 180.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 180.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 180.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 179.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 179.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 179.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 179.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 177.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 175.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 174.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 173.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 173.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 173.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 172.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 171.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 169.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 169.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 168.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 168.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 168.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 167.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 167.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 166.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 166.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 164.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 164.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 163.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 162.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 162.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 161.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 161.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 160.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 160.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 160.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 159.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 157.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 157.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 157.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 157.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 157.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 157.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 156.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 155.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 153.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 153.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 152.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 151.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 151.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 150.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 149.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 147.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 147.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 147.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 146.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 146.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 146.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 145.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 145.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 145.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 145.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 144.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 143.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 142.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 142.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 141.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 141.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 141.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 140.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 139.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 139.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 138.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 136.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 135.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 135.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 135.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 134.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 134.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 129.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 126.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 125.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 124.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 123.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 123.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 120.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 120.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 120.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 120.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 119.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 118.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 113.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 113.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 110.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 106.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 102.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 98.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 86.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 72.4
FF:10181-103D1 60 years, female 111.2
FF:10159-103A6 76 years, female 33.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 172.7
Samples: 4

Max nTPM: 237.3
Min nTPM: 138.7
Sample A Female 138.7
Sample B Female 170.9
Sample C Male 237.3
Sample D Male 143.7
Ventral spinal cord
nTPM: 159.3
Samples: 4

Max nTPM: 183.1
Min nTPM: 130.7
Sample A Female 130.7
Sample B Female 178.2
Sample C Male 183.1
Sample D Male 145.3

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