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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:167.9 nTPM
HPA Brain:151.2 nTPM
GTEx:167.9 nTPM
FANTOM5:74.3 Scaled Tags Per Million
Pig:66.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.0
2565 Male, age 75, midline 143.5
1981 Female, age 72, midline 105.2
2194 Female, age 79, both hemispheres 104.1
2816 Male, age 47, midline 102.8
2048 Male, age 55, midline 94.4
Cervical spinal cord, dorsal horn
nTPM: 93.2
2173 Female, age 72, unknown 113.8
2296 Male, age 66, both hemispheres 105.0
1877 Male, age 55, unknown 98.9
2069 Male, age 47, both hemispheres 93.1
2297 Male, age 75, both hemispheres 79.3
2721 Male, age 90, both hemispheres 69.1
Cervical spinal cord, ventral horn
nTPM: 151.2
2480 Male, age 75, both hemispheres 220.8
2809 Male, age 90, both hemispheres 205.9
2295 Male, age 66, both hemispheres 151.6
2068 Male, age 55, unknown 120.5
2820 Female, age 79, both hemispheres 109.1
2098 Female, age 72, unknown 99.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 167.9
Samples: 159

Max nTPM: 542.2
Min nTPM: 55.0
Std nTPM: 77.5
Median nTPM: 153.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 542.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 394.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 383.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 366.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 365.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 361.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 351.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 328.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 322.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 314.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 305.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 299.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 295.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 281.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 276.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 273.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 264.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 264.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 262.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 260.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 252.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 252.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 250.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 248.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 248.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 237.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 230.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 228.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 227.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 226.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 225.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 220.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 215.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 214.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 210.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 205.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 202.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 200.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 198.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 197.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 195.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 192.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 192.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 189.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 189.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 188.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 184.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 179.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 178.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 176.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 175.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 173.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 171.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 171.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 171.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 171.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 170.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 170.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 170.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 170.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 167.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 167.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 166.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 166.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 166.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 166.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 164.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 161.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 161.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 158.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 158.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 156.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 155.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 154.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 153.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 152.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 152.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 149.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 148.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 143.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 141.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 141.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 140.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 139.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 138.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 138.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 138.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 137.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 136.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 134.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 133.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 131.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 129.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 129.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 128.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 128.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 128.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 127.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 125.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 125.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 124.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 121.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 120.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 120.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 120.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 120.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 119.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 117.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 115.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 112.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 111.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 111.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 110.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 109.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 109.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 108.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 108.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 106.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 105.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 104.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 101.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 99.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 99.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 97.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 92.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 92.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 91.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 90.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 90.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 86.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 86.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 85.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 78.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 77.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 77.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 69.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 63.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 62.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 57.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 56.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.3
FF:10181-103D1 60 years, female 83.4
FF:10159-103A6 76 years, female 65.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 58.8
Samples: 4

Max nTPM: 66.0
Min nTPM: 51.1
Sample A Female 51.1
Sample B Female 60.2
Sample C Male 66.0
Sample D Male 57.8
Ventral spinal cord
nTPM: 66.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 55.8
Sample A Female 55.8
Sample B Female 68.3
Sample C Male 60.8
Sample D Male 79.2

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