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FLRT3
HPA
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  • FLRT3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

FLRT3
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Fibronectin leucine rich transmembrane protein 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 20
Cytoband p12.1
Chromosome location (bp) 14322985 - 14337614
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000125848 (version 109)
Entrez gene 23767
HGNC HGNC:3762
UniProt Q9NZU0 (UniProt - Evidence at protein level)
neXtProt NX_Q9NZU0
GeneCards FLRT3
Antibodypedia FLRT3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Functions in cell-cell adhesion, cell migration and axon guidance, exerting an attractive or repulsive role depending on its interaction partners. Plays a role in the spatial organization of brain neurons. Plays a role in vascular development in the retina (By similarity). Plays a role in cell-cell adhesion via its interaction with ADGRL3 and probably also other latrophilins that are expressed at the surface of adjacent cells 1. Interaction with the intracellular domain of ROBO1 mediates axon attraction towards cells expressing NTN1. Mediates axon growth cone collapse and plays a repulsive role in neuron guidance via its interaction with UNC5B, and possibly also other UNC-5 family members (By similarity). Promotes neurite outgrowth (in vitro) 2. Mediates cell-cell contacts that promote an increase both in neurite number and in neurite length. Plays a role in the regulation of the density of glutamaergic synapses. Plays a role in fibroblast growth factor-mediated signaling cascades. Required for normal morphogenesis during embryonic development, but not for normal embryonic patterning. Required for normal ventral closure, headfold fusion and definitive endoderm migration during embryonic development. Required for the formation of a normal basement membrane and the maintenance of a normal anterior visceral endoderm during embryonic development (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell adhesion
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the fibronectin leucine rich transmembrane protein (FLRT) family. FLRTs may function in cell adhesion and/or receptor signalling. Their protein structures resemble small leucine-rich proteoglycans found in the extracellular matrix. This gene is expressed in many tissues. Two alternatively spliced transcript variants encoding the same protein have been described for this gene. [provided by RefSeq, Jul 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
FLRT3-201
ENSP00000339912
ENST00000341420
Q9NZU0
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT3
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Endocrine and metabolic diseases
   Hypothalamus and pituitary gland diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003345 [proepicardium cell migration involved in pericardium morphogenesis]
GO:0005104 [fibroblast growth factor receptor binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0007411 [axon guidance]
GO:0007416 [synapse assembly]
GO:0007507 [heart development]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0030054 [cell junction]
GO:0030424 [axon]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0031175 [neuron projection development]
GO:0032584 [growth cone membrane]
GO:0042803 [protein homodimerization activity]
GO:0042995 [cell projection]
GO:0043679 [axon terminus]
GO:0044295 [axonal growth cone]
GO:0045211 [postsynaptic membrane]
GO:0045499 [chemorepellent activity]
GO:0048598 [embryonic morphogenesis]
GO:0048678 [response to axon injury]
GO:0050808 [synapse organization]
GO:0050919 [negative chemotaxis]
GO:0051965 [positive regulation of synapse assembly]
GO:0060322 [head development]
GO:0070161 [anchoring junction]
GO:0097060 [synaptic membrane]
GO:0098742 [cell-cell adhesion via plasma-membrane adhesion molecules]
GO:0098978 [glutamatergic synapse]
GO:0099560 [synaptic membrane adhesion]
GO:1990138 [neuron projection extension]
Show all
649 aa
73 kDa
Yes 1
FLRT3-202
ENSP00000367292
ENST00000378053
Q9NZU0
[Direct mapping] Leucine-rich repeat transmembrane protein FLRT3
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Endocrine and metabolic diseases
   Hypothalamus and pituitary gland diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0003345 [proepicardium cell migration involved in pericardium morphogenesis]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0007155 [cell adhesion]
GO:0007416 [synapse assembly]
GO:0007507 [heart development]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0016020 [membrane]
GO:0030054 [cell junction]
GO:0030424 [axon]
GO:0030674 [protein-macromolecule adaptor activity]
GO:0031012 [extracellular matrix]
GO:0031175 [neuron projection development]
GO:0032584 [growth cone membrane]
GO:0042803 [protein homodimerization activity]
GO:0042995 [cell projection]
GO:0043679 [axon terminus]
GO:0044295 [axonal growth cone]
GO:0048598 [embryonic morphogenesis]
GO:0048678 [response to axon injury]
GO:0050919 [negative chemotaxis]
GO:0060322 [head development]
GO:0070161 [anchoring junction]
GO:0097060 [synaptic membrane]
GO:0098742 [cell-cell adhesion via plasma-membrane adhesion molecules]
GO:1990138 [neuron projection extension]
Show all
649 aa
73 kDa
Yes 1

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